Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01557 ATGGCCACAGTAGAAATGATCATTGCATTCCACATGAAGGCTTTGGTCTTTTTCCTTTGCCTCTTTCTCCCCTCATTGCCCAAACACTTGCTAAGCTTTGAGACACCTTCACCTGATCTCTCTGCCTACCATTGCATCGAAAATGTCTCACACAACCAATGTGCAACATTTGCACTCTTTCTCACAAACTCCTACTACTCCTCTCTCTCCAACCTCACCACTTACTTGGGACTCAATAAGTTTGTGGTAGCACAAGCAAATGGATTCTCTCCACACACTGAGTTCCTCTCCCTCGATCAACCCCTTCTCATTCCAATTCATTGCACATGCAAAGGCCGCTTCTTTCATGCTCAGCTAACTAAAATTGCTATCAAAGGAGAGAACTTCTATGACATTGCTGCTTCACTTGAGGGCTTGACAACCTTCAAGGCTATTACTGACAACAACCCTGGTGTGTCACCTTGGAATCTTCATGACAAAGTCAGATTGATTATCCCATTGACCTGTTCTTGCCCCTTTTCATCACTAGTTAGACCTCAACCAAAGCTTCTGCTTTCTTATCCTGTAAGACAAGGTGATACACTTTCCACTTTGGCCTCCAAGTTTAATATTACTCAAGAAGCTATTGTCTCTGCCAATAACATATCATCATCACAAGGTCTCAGCACTAGAAGTTCTCTTCCACCCTTTACCTCTATTCTCATTCCTCTCAATGGTAAGCCTGTCATTGCTTCTTTTGTTAAACCCAAGGAACCCAATTCTGGTTTTCAAGCAACCAGCATCCCTGTAACCAGTCCACACAAGAAGTCATCAATGTGGAAGACTGAATTGTTCATTGGCCTTGCTGGGGTTGCTCTTGGAGTCTGCATTGCTCTTGCTGCAGCCTTTTTCTTCATCAGATTGAAGCACAAGAAGGGGGAAGAGAGTTCATGCAAAAACGGAGATATGGAGCTTCAACATCTCAATCAAAGTGTGAGAACCAACTCCACCGGTGACAAGAAAGTTTCATTTGAAGGGTCTCAGGATACCCTTGATGAGAAAATTGTTGATGCCACTTCGCGCAAGATGTTGCTGGAGACATACACCATCGAGAACATCAGAAAAGCAACTGAAGATTTCAGCTCAAGCAATCACATTGAAGGATCGGTATATCACGGTCGTCTGAATGGGAAGAACATGGCAATCAGGAGAACAAAGGCAGAAACAGTGTCAAAGATAGATCTTGGCCTTTTCCATGATGCACTTCACCACCACCCCAACATACTCAGGCTTCTTGGAACAAGCATGTCAGAGGGGAAGGAGCAAGAAGAGTCATTTTTAGTTTTTGAGTATGCCAAAAATGGTTCATTGAAAGATTGGCTCCATGGTGGATTAGCCATCAAGAACCAATTCATTGCTTCCTGCTACTGTTTCCTGACATGGAGGCAAAGGCTGAGGATCTGCCTTGATGTGGCCAGTGCCTTGCAGTATATGCACCATGTTATGAATCCCTGCTATGTGCATAGGAATGTAAAGAGCAGGAACATCTTTCTGGACGAAGAATTTGGTGCCAAGTTAGGGAATTTTGGTATGGCAGGTTGTGTTGAGAATGACACTGCGGATCCAAACTTCTATTCCACCAACCCCGCCTCCTGGAGCCTTGGTTATTTGGCACCTGAATACGTTCACCAAGGTATAATTGCCCCAAGCATTGATATCTTTGCCTATGGGGTGGTTTTGTTAGAGGTTTTATCTGGTCAAACTCCTATAAGCAGGCCCAATGAGAAGGGAGAAGGAAGCATTTGGCTCACAGATAAAATCAAGTCCATCTTGGTGTCTGAAAATGTGAATGAACTAAGGGGCTGGATTGACAGTGCATTAGGGGAGAACTATTCATTCGATGCAGCTGTGACCATTGTCAACATTGCCAGAGCTTGTGTGGAGGAAGATTCTTCATTGAGACCAAGTGCAAGGGAAATTGTTGAGAAGCTATCGAGATTGGTGGAGGAATTACCAGAAGGAGAACAACACATGTTAATGAGTGAAAGCTCTAGCAAACCTCTGGTGAAGGCAGTGGAAAACAGTCTTGAGTAA 2073 0.4399 MATVEMIIAFHMKALVFFLCLFLPSLPKHLLSFETPSPDLSAYHCIENVSHNQCATFALFLTNSYYSSLSNLTTYLGLNKFVVAQANGFSPHTEFLSLDQPLLIPIHCTCKGRFFHAQLTKIAIKGENFYDIAASLEGLTTFKAITDNNPGVSPWNLHDKVRLIIPLTCSCPFSSLVRPQPKLLLSYPVRQGDTLSTLASKFNITQEAIVSANNISSSQGLSTRSSLPPFTSILIPLNGKPVIASFVKPKEPNSGFQATSIPVTSPHKKSSMWKTELFIGLAGVALGVCIALAAAFFFIRLKHKKGEESSCKNGDMELQHLNQSVRTNSTGDKKVSFEGSQDTLDEKIVDATSRKMLLETYTIENIRKATEDFSSSNHIEGSVYHGRLNGKNMAIRRTKAETVSKIDLGLFHDALHHHPNILRLLGTSMSEGKEQEESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWRQRLRICLDVASALQYMHHVMNPCYVHRNVKSRNIFLDEEFGAKLGNFGMAGCVENDTADPNFYSTNPASWSLGYLAPEYVHQGIIAPSIDIFAYGVVLLEVLSGQTPISRPNEKGEGSIWLTDKIKSILVSENVNELRGWIDSALGENYSFDAAVTIVNIARACVEEDSSLRPSAREIVEKLSRLVEELPEGEQHMLMSESSSKPLVKAVENSLE 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01557 690 Pfam LysM domain 187 219 IPR018392 -
Vian2g01557 690 SUPERFAMILY LysM domain 186 218 IPR036779 -
Vian2g01557 690 ProSiteProfiles LysM domain profile. 185 235 IPR018392 -
Vian2g01557 690 CDD LysM 186 221 IPR018392 -
Vian2g01557 690 FunFam PTI1-like tyrosine-protein kinase 3 445 671 - -
Vian2g01557 690 Gene3D Phosphorylase Kinase; domain 1 345 444 - -
Vian2g01557 690 Gene3D LysM domain 185 236 IPR036779 -
Vian2g01557 690 MobiDBLite consensus disorder prediction 668 690 - -
Vian2g01557 690 SUPERFAMILY Protein kinase-like (PK-like) 356 657 IPR011009 -
Vian2g01557 690 Pfam Protein kinase domain 381 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01557 690 ProSiteProfiles Protein kinase domain profile. 322 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01557 690 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 25 664 - -
Vian2g01557 690 SMART LysM_2 186 236 IPR018392 -
Vian2g01557 690 Gene3D Transferase(Phosphotransferase) domain 1 445 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01557 Vian-Chr2 32280463 32282535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01557 42 683 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 39.940 2.33e-142 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vian2g01557 Pkinase 4.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01557 - - gmx:100816082 1169.84