Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01552 ATGGGAGAGGATTCTAGGGAGTTTGGAGAAAGCACCAAAATCAACGACAAGATGGAAGAAGTTGAAAGAGAGGAAGAAATAGACCCAGAAAGCAATCCACTGAATGAGCCACTGCTCAAGAGGAACCGGACACTGTCTTCCAACCCTCTTGCTCTTATTGGAGAAAAAGTTTCCTACATAGAAAGCTTGGATTATGAGATAAATGAGAATGATCTATTCAAGCATGACTGGAGGAGCAGATCAGGAGTTCAAGTGTTGCAGTACATATTCTTGAAATGGTTACTTGCATTCCTTGTTGGACTTCTCACTGGTATTATAGCCACTCTCATCAATCTTGCTATTGAGAACATTGCTGGGTATAAGCTTCTGGCTGTTCTTAAATACATCCACAAAGAAAGGTACTGGACAGGTTTCCTATATTTCACGGGCATTAATTTCCTTTTGACATTTGTTGCTGCTATTCTGTGCGTGTGTTTTGCACCCACAGCAGCAGGACCTGGAATTCCTGAAATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTTTGGTGCTACAACATTGATTGTCAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGACTAGATTTGGGAAAAGAAGGACCGTTGGTACACATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGCCCCGACAATTACAGGATCAAATGGCGTTGGCTTCGATATTTTAACAATGATCGTGACCGTCGGGATCTTATCACCTGTGGTTCATCTTCGGGAGTTTGTGCAGCTTTCCGGGCTCCAGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTACTCTGGAGAACCTTTTTTAGCACAGCTGTGGTGGTGGTGGTTCTCAGGGCCTTCATTGAAATCTGCAATTCTGGAAAATGTGGCCTTTTTGGTGAAGGAGGTCTGATTATGTTTGATGTAAGCAATGTCACAGTGAGGTACCATGCTATGGATATTGTCATCGTTGTAGTCATTGGTATTATAGGCGGGGTATTGGGAAGCCTTTACAATCATGTGCTACACAAGATCCTCAGACTCTACAATCTCATCAATCAGAAAGGAAAGATACATAAACTCCTCCTCAGTCTTGCAGTTGCACTCTTCACATCTATGTGCCAATATGGTCTCCCATTCTTAGCAAAATGTACCCCATGTGATTCATCGATTCCAGAGTCAGCATGCCCCACCAATGGACGATCCGGAAATTTCAAACAATTCAACTGCCCACCTGGCTTCTATAACGATCTGGCCACTCTGCTGCTTACCACTAATGACGATGCTGTTCGAAACATATTCTCAACCAACACCCCTCTAGAATATCAACCCATGTCCCTCCTAATTTTCTTTGTACTATATTGCATATTAGGACTAATTACTTTTGGAATTGCAGTGCCATCTGGGCTTTTCCTCCCAATTATTCTTATGGGCTCAGGTTATGGACGCCTTCTTGGCTTCTATATGGGGCCTCATACAAACATTGACCAAGGGCTGTTTGCCGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACGGTATCCCTTTGTGTGATCTTTCTAGAACTCACCAATAATCTTCTTCTATTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTGGGAGACAGTTTCAACCCAAGTATCTATGAAATTATACTGCACTTGAAAGGCCTCCCTTTCATGGATGCAAATCCCGAGCCATGGATGAGAAATCTCACTGTGGGTGAGCTTGTTGATGTAAAGCCATCAGTGGTTACCCTCCACGGAATAGAGAAGGTATCTAAAATAGTAGATGTCTTGAAAAACACTACGCATAATGGCTTTCCTGTTTTGGATGATGGGGTAGTAGTACCACCAGTAGTAGGACATGCCAATGGAGCAACAGAGTTGCATGGACTAGTTTTAAGAGCACATCTCATCCAAGCACTAAAGAAGAAGTGGTTCTTTAAAGAAAGAAGGAGAACAATGGACTGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTTGCTGAGAGAGAAGGAAGTATTGAAGGGGTGGCTGTGACCAGCGAGGAAATGGAGATGTTTGTAGATCTACATCCTCTAACCAATACAACTCCCTTTACCGTGCTAGAGAGCATGTCAGTAGCAAAAGCAATGATTCTCTTCAGGCAAGTTGGACTTCGTCATCTGCTTGTAGTTCCCAAGTATCAAGCATCCGGGGTATCCCCAGTAATTGGGATCTTGACCAGGCAAGATCTTCTGGCACACAACATTTTGACAGTCTTTCCTCACCTGGCAAAATCTAAGAGCAGAGGAAAAAGAAATTGA 2376 0.4364 MGEDSREFGESTKINDKMEEVEREEEIDPESNPLNEPLLKRNRTLSSNPLALIGEKVSYIESLDYEINENDLFKHDWRSRSGVQVLQYIFLKWLLAFLVGLLTGIIATLINLAIENIAGYKLLAVLKYIHKERYWTGFLYFTGINFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICNSGKCGLFGEGGLIMFDVSNVTVRYHAMDIVIVVVIGIIGGVLGSLYNHVLHKILRLYNLINQKGKIHKLLLSLAVALFTSMCQYGLPFLAKCTPCDSSIPESACPTNGRSGNFKQFNCPPGFYNDLATLLLTTNDDAVRNIFSTNTPLEYQPMSLLIFFVLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGFYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPSVVTLHGIEKVSKIVDVLKNTTHNGFPVLDDGVVVPPVVGHANGATELHGLVLRAHLIQALKKKWFFKERRRTMDWEVREKFTWVELAEREGSIEGVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPHLAKSKSRGKRN 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01552 791 MobiDBLite consensus disorder prediction 1 37 - -
Vian2g01552 791 MobiDBLite consensus disorder prediction 1 20 - -
Vian2g01552 791 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian2g01552 791 PRINTS Chloride channel signature 192 211 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian2g01552 791 PRINTS Chloride channel signature 256 275 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian2g01552 791 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian2g01552 791 PRINTS Chloride channel signature 161 178 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian2g01552 791 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian2g01552 791 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian2g01552 791 CDD ClC_6_like 61 583 - -
Vian2g01552 791 FunFam Chloride channel ClC3 84 405 - -
Vian2g01552 791 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vian2g01552 791 PRINTS Plant CLC chloride channel signature 277 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vian2g01552 791 PRINTS Plant CLC chloride channel signature 291 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vian2g01552 791 PRINTS Plant CLC chloride channel signature 309 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vian2g01552 791 PRINTS Plant CLC chloride channel signature 66 74 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vian2g01552 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 22 776 - -
Vian2g01552 791 Gene3D Clc chloride channel 83 585 - -
Vian2g01552 791 Pfam Voltage gated chloride channel 149 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vian2g01552 791 ProSiteProfiles CBS domain profile. 718 784 IPR000644 -
Vian2g01552 791 SMART cbs_1 721 774 IPR000644 -
Vian2g01552 791 SMART cbs_1 605 666 IPR000644 -
Vian2g01552 791 Pfam CBS domain 720 770 IPR000644 -
Vian2g01552 791 SUPERFAMILY CBS-domain pair 587 771 IPR046342 -
Vian2g01552 791 Gene3D - 586 777 IPR046342 -
Vian2g01552 791 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 772 - -
Vian2g01552 791 SUPERFAMILY Clc chloride channel 70 585 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01552 Vian-Chr2 32179247 32183814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01552 3 785 Ion Channels AT3G27170 78.799 0.0 1244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01552 K05016 - gmx:100788620 1461.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01552 2 32179247 32183814 Vian2g01552 2 32179247 32183814 ECH
Vian2g01552 2 32179247 32183814 Vian8g00547 8 9488806 9493298 PCT