Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01534 ATGGCGATGGAAGTGGAGAACAATCACAATCAACAATTAGGGTTTCCGTTCTGGAAACCGATCCGTCGCAAGTTCGGGCCCGACTCTCCTTTCTTCGCTCCCGGCAATCTCGAACGAGAACTTCTTGCCAAACAGGTTGCTTTGGAATTGACAGAAGAGAAGGAACAGCTTGAGAAATGGATGCAAGAGGAAGAAGGAAGGGAAATCTTTTGTCCCATTGTTGGCTGTGGTGCACGCTTGACTTCAATGGATGACTTCGAGAATCACTATAATGCAAGGCATACTGCATCTTGTTCTGTGTGCTTTAGAGTTTACCCAACGTCTCGGTTGCTCAGCATACATGTATCTGAAGTGCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGTTACGATATGTATGAATGCTTGGTGGAAAAGTGTGGTTTGAAATTCAAAAGCTACAATCGTAGGCATCAGCATCTGGTTGACAAGCATAAATTTCCCACCTCATTTGAGTTTTTCAAGAAGGCTAAACCTTCAAAGAAACAGAGATTGAAGTCCCAACAAAAAAAAGCTGTTCCTAAGGAGAAGGATGCAGGAATGATGGAAGTGGAAAACGCAACCGTGGATGACCTTGTTTCAGCAGTCTCTAAACTGAGCACTTCTGACTCCACCCCTTCAAATATCAGCTTTGGTCGCCGCAGCAAAGGCTTGTCATTCGTCCCTCGAACTGTTCAGCGCAGAGATCAATCAAACCCAGCAGCATCTGGGACAAAGAGATAA 765 0.4484 MAMEVENNHNQQLGFPFWKPIRRKFGPDSPFFAPGNLERELLAKQVALELTEEKEQLEKWMQEEEGREIFCPIVGCGARLTSMDDFENHYNARHTASCSVCFRVYPTSRLLSIHVSEVHDSFFQAKVARGYDMYECLVEKCGLKFKSYNRRHQHLVDKHKFPTSFEFFKKAKPSKKQRLKSQQKKAVPKEKDAGMMEVENATVDDLVSAVSKLSTSDSTPSNISFGRRSKGLSFVPRTVQRRDQSNPAASGTKR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01534 254 PANTHER UNCHARACTERIZED 12 242 IPR039258 -
Vian2g01534 254 SMART c2h2final6 134 159 IPR013087 -
Vian2g01534 254 SMART c2h2final6 96 119 IPR013087 -
Vian2g01534 254 SMART c2h2final6 69 94 IPR013087 -
Vian2g01534 254 MobiDBLite consensus disorder prediction 212 254 - -
Vian2g01534 254 ProSitePatterns Zinc finger C2H2 type domain signature. 71 94 IPR013087 -
Vian2g01534 254 MobiDBLite consensus disorder prediction 238 254 - -
Vian2g01534 254 Coils Coil 43 67 - -
Vian2g01534 254 MobiDBLite consensus disorder prediction 212 228 - -
Vian2g01534 254 ProSitePatterns Zinc finger C2H2 type domain signature. 98 119 IPR013087 -
Vian2g01534 254 ProSitePatterns Zinc finger C2H2 type domain signature. 136 159 IPR013087 -
Vian2g01534 254 Coils Coil 249 254 - -
Vian2g01534 254 MobiDBLite consensus disorder prediction 172 195 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01534 1 250 C2H2 Transcription Factor Family AT5G14140 62.308 2.07e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g01534 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01534 - - gmx:100819557 431.795