Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01516 ATGGATCCCAAGAGCTCAAAGCAGCCACTGGCACAGGAGGTGGTACCAAACTTTCTTAGCCTTCCCCAACAACAATCGCCACCACCACAACAGCAACAACAACAAGGTAGTAATAGCAACATGGGAGAGAACAAGCCAGGGGAGATGAAGGATTTTCAGATAGTGGTCAGTGAGAAGGATGAGAGCAAGAAGCAGTTGGCTCCGAAGAGGAGTTCGAACAAGGACAGACACACGAAGGTTGAAGGAAGGGGACGGAGGATAAGGATGCCTGCTCTATGTGCAGCTAGAATCTTTCAGTTGACCAGAGAATTGGGTCACAAATCTGATGGGGAAACGATCCAGTGGCTTCTTCAGCAGGCTGAGCCATCGATAATAGCTGCTACTGGGACAGGTACAATCCCAGCATCTGCTTTGGCTGCTGCTGGGAACTCAGTTTCACCACAAGGGGCATCTCTTTCATCAGGGTTGCACCATAAGATTGATGAATTGGGAGGGTCCAATATGGGGTCAGGTAGCAGTAGGACCAGTTGGCAAATGGTTGGGGGGAATTTGGGGAGACCCCATGTGGCCACGGGACTATGGCCCCCCCATGTCAGTGGATTTGGATTTCAGACATCCTCTGGTCCATCTAATGCCGCCCTAGGCACTGAGAGTTCAAATTACCTGCAAAAGATTGCCTTCCCTGGCTTTGACTTGCCTGCTGCTGCCACCAACATGGGTCACATGAGTTTCACCTCAATATTGGGTGCTGCGGGTACCCCGCAGATGCCTGGTTTGGAGCTGGGCTTGTCCCAGGATGGCCATATTGGAGTCTTGAATCCACAGGCCTTGAGCCAGATTTATCAGCAGATGGGTCAGGCTAGAGTGCAGCAGCAGCAGCATCAACAACAACATCAGCAAACTCCTGCAAAGGATGATTCTCAAGGCTCAGGACAGTAG 939 0.5122 MDPKSSKQPLAQEVVPNFLSLPQQQSPPPQQQQQQGSNSNMGENKPGEMKDFQIVVSEKDESKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSVSPQGASLSSGLHHKIDELGGSNMGSGSSRTSWQMVGGNLGRPHVATGLWPPHVSGFGFQTSSGPSNAALGTESSNYLQKIAFPGFDLPAAATNMGHMSFTSILGAAGTPQMPGLELGLSQDGHIGVLNPQALSQIYQQMGQARVQQQQHQQQHQQTPAKDDSQGSGQ 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01516 312 MobiDBLite consensus disorder prediction 283 312 - -
Vian2g01516 312 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 281 IPR005333 GO:0003700
Vian2g01516 312 MobiDBLite consensus disorder prediction 1 84 - -
Vian2g01516 312 MobiDBLite consensus disorder prediction 10 44 - -
Vian2g01516 312 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Vian2g01516 312 MobiDBLite consensus disorder prediction 52 84 - -
Vian2g01516 312 Pfam TCP family transcription factor 72 164 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01516 Vian-Chr2 31376657 31377595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01516 1 312 TCP Transcription Factor Family AT3G27010 53.754 4.16e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian2g01516 TCP 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01516 - - vun:114191990 520.005