Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01500 ATGGAAGTGTTAAACCCAGTTGGAGGCGATACCTATAGGCTCCCTGTTGGGTACAGGTTCGACCCCACCGATGAAATTCTTGCAGGCTACTACCTCAGGAAGAGGATCATGGCACACCCACTTCCCAATGATCTCATCCAAGACTATGATGTTCACCAGACTGAGCCTTGGGAGCTTCCAGGAGGTGGGAAGTGCATGAATTGGCAGAGGTTTTTCTTCTACGATGTGAGGAGCCGTGTGTTAGGAAACCCTGAGAAGAGAGATGCTGGGAAAGGGCAATGGGAAATGGTGGAGAAAGATGAAGAGGTTGGGTTTTCTGACGAACAAGTCATTGCAAAGAAGAGTGTTCTGGTTTTCTGGAAAGCCAAGGGTAGCTCTCTTGCCAAAACAAAATGGGTGATGCACGAGTTTCGTCTTGCCCTAAAGTCAAATCCATCAAAGATGTCAGCCTTGGCTGTGTGCCGCATATTCGAGAGGAAAAATTCAAAGAGGGCAAAGAAAGCAAGAGTGTGTGAAGGGGTGAAGTCTGACAGGAGCAATATTGAAGAAGCTAAGGATGTCACAGCCACTGTCATTGATTTCACAGTGGAGTGTAGCACTGAGACTGGTCCTCCTCCTCCTCCTCCTCCTGGGACCCCCTAG 642 0.4875 MEVLNPVGGDTYRLPVGYRFDPTDEILAGYYLRKRIMAHPLPNDLIQDYDVHQTEPWELPGGGKCMNWQRFFFYDVRSRVLGNPEKRDAGKGQWEMVEKDEEVGFSDEQVIAKKSVLVFWKAKGSSLAKTKWVMHEFRLALKSNPSKMSALAVCRIFERKNSKRAKKARVCEGVKSDRSNIEEAKDVTATVIDFTVECSTETGPPPPPPPGTP 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01500 213 Gene3D NAC domain 23 165 IPR036093 GO:0003677|GO:0006355
Vian2g01500 213 PANTHER NAC TRANSCRIPTION FACTOR 56 14 176 - -
Vian2g01500 213 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vian2g01500 213 ProSiteProfiles NAC domain profile. 14 159 IPR003441 GO:0003677|GO:0006355
Vian2g01500 213 SUPERFAMILY NAC domain 10 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01500 Vian-Chr2 31068746 31069926 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01500 1 162 NAC Transcription Factor Family AT5G13180 34.940 8.94e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian2g01500 NAM 2.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01500 - - vum:124846897 405.986