Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01496 ATGTATGAGTTCCTGAAGCAGCCCACAAACGGTGGTGTAAAGAGACCACTACCACCACCTTCCACCACCGTCAACACTACCACAACCACCACCACCACCGCTGCAGCCACCACACGCACCTTCCAATGCCATTTCTGCCACCGCAAGTTCTACACCTCGCAAGCCCTCGGCGGCCACCAAAACGCACACAAGCTGGAGCGAGCAGCCGCGAGGAGACAAACCAACGGGCTTCTCCCGCCGCCCCCCCTGCCGCTGGAGCCTGCCCTCAAGCAAACCGAGCCCAGACCCAGGCCCATGTTGGAGCCACTGGAGCCCTCCACCGGGCTCTTCTTCCACCATCCCTACTGGCTGGATGTGGAGCCCCTGCAGTTCCAAAGCACTCACCCTTACGTGACCGCCGCTACCCTCCCCGTTCCGTTCCACGCCGCGTCTTCCACCGTACCCCAACAACAACAAGTCCTTTCCCACAATGTCGACGCTTCCGACCACGTGAACCTCGACCTCACTCTCCGCTTGTGA 519 0.6108 MYEFLKQPTNGGVKRPLPPPSTTVNTTTTTTTTAAATTRTFQCHFCHRKFYTSQALGGHQNAHKLERAAARRQTNGLLPPPPLPLEPALKQTEPRPRPMLEPLEPSTGLFFHHPYWLDVEPLQFQSTHPYVTAATLPVPFHAASSTVPQQQQVLSHNVDASDHVNLDLTLRL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01496 172 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Vian2g01496 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Vian2g01496 172 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 26 75 IPR044246 GO:0009788
Vian2g01496 172 MobiDBLite consensus disorder prediction 77 91 - -
Vian2g01496 172 SUPERFAMILY beta-beta-alpha zinc fingers 38 68 IPR036236 -
Vian2g01496 172 MobiDBLite consensus disorder prediction 74 94 - -
Vian2g01496 172 MobiDBLite consensus disorder prediction 1 30 - -
Vian2g01496 172 Gene3D Classic Zinc Finger 21 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01496 Vian-Chr2 30995136 30995654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01496 36 83 C2H2 Transcription Factor Family AT5G14010 66.667 4.56e-15 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g01496 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01496 - - vra:106758350 296.975