Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01482 ATGATGATGGATCAGCGACAGCGAGAGAAACTGCTTCGCAAAACCGAGGCCTGTGCCTTCGTGGCAGGTGTTGCTGCCGACCTTCGACTTGTCGCCGCCCCAGGAGACATCCCCAACACCAACAACGTTAACAGCATCACCAACACCACCAGCACCACCAGCAACGTATCTAAATCTCACGGGTCGGGTCGGATCCATGACGCCAACCACCTTGGTCTCGTCGCTGCGTTTACCAACCTTGGAACTGTTCACAGGAAGAAGAGATTGCCCAGGCAGCGAAGATCCACCGTCACCACCACCCCCACCTTGTTTCTCCCCTCTAAGCAGCACGACCCTAATTTACCATCTTCAACTCCTTCCGCCTCCTCCTCTCTCCAGTCCGTTAAACCCTCCACTCCTCTCCGGCTCGCCGCACGTGAAATCGATCATAGAAACTTGAGGTTCCTTTTCAAAAAGGAGTTAAAGAACAGTGATGTTAGCTCCCTAAGGAGAATGGTATTGCCGAAGAAAGCAGCAGAGACTTTTCTTCCACCGCTGGATTCAAAAGAAGGAATTTTGCTCAAAATGGATGACAAAGATGGTACTCATGCATGGAGTTTCAAGTACAGGTTTTGGCCTAACAACAATAGTAGGATGTACGTACTTGAAAATACCGGAGATTTTGTCAGCACACATGGCCTTCGATTTGGCGATACCATTATGATTTACCAACATATTGAAAACAATAACTATGTTATTCAGGCTAGAAAAGCTTCCGAAGAAGATGAATTTGTGGAACAAAGTAGTGAGACTATGAACGACATGTTCCCGAGTGACTTGGAGGTGAACAAACCAGGTTGTTTCAACATAAACTATCCTGCAGTGAATGATGCTGGCATGTCGTTCATATATGAGACTACTTTCTCAAATGACTCCCCACTTGACTTTTTGGGAGGATCAATGACGAACTTTTCAAGGATTGGACCAGCTGATGAAACCTTTGGTTCTGTTGAAAATTTGTCCCTTGATGACTTCTATTAA 1020 0.4637 MMMDQRQREKLLRKTEACAFVAGVAADLRLVAAPGDIPNTNNVNSITNTTSTTSNVSKSHGSGRIHDANHLGLVAAFTNLGTVHRKKRLPRQRRSTVTTTPTLFLPSKQHDPNLPSSTPSASSSLQSVKPSTPLRLAAREIDHRNLRFLFKKELKNSDVSSLRRMVLPKKAAETFLPPLDSKEGILLKMDDKDGTHAWSFKYRFWPNNNSRMYVLENTGDFVSTHGLRFGDTIMIYQHIENNNYVIQARKASEEDEFVEQSSETMNDMFPSDLEVNKPGCFNINYPAVNDAGMSFIYETTFSNDSPLDFLGGSMTNFSRIGPADETFGSVENLSLDDFY 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01482 339 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
Vian2g01482 339 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Vian2g01482 339 MobiDBLite consensus disorder prediction 43 62 - -
Vian2g01482 339 SMART B3_2 150 252 IPR003340 GO:0003677
Vian2g01482 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 92 263 IPR044800 GO:0003700
Vian2g01482 339 SUPERFAMILY DNA-binding pseudobarrel domain 148 247 IPR015300 -
Vian2g01482 339 CDD B3_DNA 148 250 IPR003340 GO:0003677
Vian2g01482 339 MobiDBLite consensus disorder prediction 94 131 - -
Vian2g01482 339 Gene3D - 146 265 IPR015300 -
Vian2g01482 339 MobiDBLite consensus disorder prediction 84 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01482 Vian-Chr2 30750812 30754031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01482 44 339 B3 DNA Binding Superfamily AT3G26790 47.273 3.67e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian2g01482 B3 7.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01482 K09287 - gmx:100813055 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01482 2 30750812 30754031 Vian2g01482 2 30750812 30754031 ECH