Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01472 ATGGATAAACCACACCCTTTCAACCAGGACGCGCCACCACCGTCATGGGGTAGGCCCAATTCACAGGAAGAGGACATTGCCATTGCCTTGGGTGCCCCTCTTTCCTTTAAATCCATGCTTCAACAACAGCCTCAACAACCACAACCACAGCCACAGCCACCGCAACTTGACTCTTACTTCAACTTCAACATCAACTCTGCTATTCCCATTCCCTTTGTTCCTACTATGGAATCTTTTCCCCCTCTGGACCCCTTCTCACCTTCACTTTCATCGTCTCCTTTTTTCAACAACAGCAACAACACCGGCATGCCCTTTGACCCGGGCTTTGACTTGGGCCTCGACAACGGGCTTCACTCTTCATGCCCCCCTCTTTTCTCCCAGGTTCAGCCGGGCTTCGAGTTTGGAGAACTGGAAGCTCTTACTGCTGCACCTGGGCATGTGCCCTTTATGGAGGGACCGAAGGGGGAGAATCCTCTTGAGAGGGTGCAGCCGACCCTTTACAGGAAGAGGAGGGGAACAGCGGAGATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAGGGGGAGGCTGAGGAAGGGAGCAGTGCTGACGTGGATGGTTCTGGGCTGAATTATGAGTCTGATGAGAATGATAATGGAAATAATGGTTTGAAGAGAAGTGAGAATGGTGAAGATCACAAGGGGAAGAGAAAGGGGTTGCCTGCCAAAAATCTCATGGCGGAGAGGCGCCGCCGGAAGAAGCTCAATGATCGGTTGTACATGCTCAGGTCTGTTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACCTGAAGGAGTTGCTGCAGCGGATCAATGATCTCCATAACGAGCTGGAGACAACTTCGGCGGGCTCGTCACTGCTGCCGTCTGCTTCTACAAGCTTTCAGCCTCTAACACCCACCCTGCCAACTCTTCCCTGCAGGGTCAAGGAGGAACTAGAAAAATTTACTCCTACTACTCCTGTGTCTTCCATTGCAGTTGTATACCATTCAGAGTCTAAGAAGAAACCAGTTGAAGTTAGAGCAAGAGAAGGGAGAGCTGTGAACATTCACATGTTTTGCACCCGCCGACCAGGCCTTTTGCTGTCTACCATGAGGGCTTTGGACAACCTCGGATTGGATGTACAGCAGGCTGTTATAAGCTGTTTCAACGGCTTTGCTTTAGATGTGTTTAAAGCTGAGCAATGCAGAGAAGGGCAGGATGTGCTACCTGAGCAAATCAAAGCAGTGCTCTTGGATTCAGCAGGGTTTCATGTGCTTCTTCTTCTTATTCTCCTCTGTAGAGGCCTTACTGTTTTGGCCATGATCAAATAG 1368 0.5066 MDKPHPFNQDAPPPSWGRPNSQEEDIAIALGAPLSFKSMLQQQPQQPQPQPQPPQLDSYFNFNINSAIPIPFVPTMESFPPLDPFSPSLSSSPFFNNSNNTGMPFDPGFDLGLDNGLHSSCPPLFSQVQPGFEFGELEALTAAPGHVPFMEGPKGENPLERVQPTLYRKRRGTAEIPGLETVRRKGRKWEEGEAEEGSSADVDGSGLNYESDENDNGNNGLKRSENGEDHKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELETTSAGSSLLPSASTSFQPLTPTLPTLPCRVKEELEKFTPTTPVSSIAVVYHSESKKKPVEVRAREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLLDSAGFHVLLLLILLCRGLTVLAMIK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01472 455 MobiDBLite consensus disorder prediction 170 243 - -
Vian2g01472 455 Coils Coil 282 302 - -
Vian2g01472 455 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 285 IPR011598 GO:0046983
Vian2g01472 455 Gene3D - 228 301 IPR036638 GO:0046983
Vian2g01472 455 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 93 435 - -
Vian2g01472 455 CDD bHLH_AtAMS_like 239 304 - -
Vian2g01472 455 SMART finulus 242 291 IPR011598 GO:0046983
Vian2g01472 455 MobiDBLite consensus disorder prediction 170 195 - -
Vian2g01472 455 MobiDBLite consensus disorder prediction 1 58 - -
Vian2g01472 455 CDD ACT_UUR-ACR-like 368 409 - -
Vian2g01472 455 MobiDBLite consensus disorder prediction 216 243 - -
Vian2g01472 455 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 239 310 IPR036638 GO:0046983
Vian2g01472 455 Pfam Helix-loop-helix DNA-binding domain 243 285 IPR011598 GO:0046983
Vian2g01472 455 FunFam BHLH transcription factor 232 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01472 Vian-Chr2 30571316 30574308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01472 162 412 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 62.745 8.52e-89 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian2g01472 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01472 - - vun:114162308 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01472 2 30571316 30574308 Vian2g01472 2 30571316 30574308 ECH