Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian2g01467 | ATGTCCATCTTGCCCTCACAAACCCAAGCGTCATCTTCGTCTTCTTCATCAGCGCCATCTCCTAACCCTAATCCCCAACATGGCAGCGGAAGCCCTCTTCCTCAACAACCCTTCCCTTACCTCTCACCCCCACTCCACCATGCGCTCGGATCTCTCCAGATCTCCGGTATCGCAGGTTCTTCGACTCAAGCTACTGAAGATTCTGGTGGATCTTCCGAAAAGGTGACAGAATTAGGGTCTCCAAGTGGAGTGACGGTTTCACCTCAGCAAAACCCTAGAACACGTTCTAGGATTCACGGAGGAAGACGGGCAGGAATGGTTTCTTCTCATAGAAACCAACAAGCTCCTGGGTCCGTGGGTTCTCATGGAAGTACCCCTTTGGCAGGGAGGAAAGCTCAGACTGTGAACGGAAATTACTTGCTGAATTTTCAATATGACCCAATATCCCGTTCTCAACCCCGGGGTCCCCCTCCCTCCCCTGCAGCAAGAAGGCATTGGAAGAGGAAGCCATACAATAAAGATTTGTTTTTGCAGGCAAATTACAAGTTCATGGTGTTAGATTCGGGAAATTATTCTCCTGAGTCGATGGATCCTGATAAAATGTTGCAGTGGGAAGACATTATATGTGTGACATATTTGACCCCCTTCTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCACTGTGTCCGCAGATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTAATGATGGGTGAAGAGGATCACAAAGGCGATATCTGGAAAAGGTGTCCTCTGTGCTTTGTCATGACATCTGCCAAAGATTTATATACAGTTCACATCACAAATGTCAAACAGTATCAAGTAGGAGAAAATGTTGAGTTCACCTTTTTAACTCGGAAAAAGGACTCATTTACTCTGACAAGTAAAAATAAACAAGAGACAAATATCATATCATTTGGTAATGGACACTTCTGTGATCCCTTTTCAAAGTTTACTCTTACATCAGATGTAGATCTCTCAGTGAGGCATTCAATATCTGATCTAGATGGTTGGCTGGCCAGAGCAGATTCTGGTCTTGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCCATGCAGCAACTGGAACAGAGGAAGTGGCATTGGAATGAGCAAAAGTCTCATGACAGTGAAAATTCTAAGCCCATTGATCATGCACATCAGATACAATCCATGGTCGTAAATTCTATGGATACTGATGATGAAAACTGTTCTAATGGGTCAAAAACTTCCTCTACTGATTACAGCGACCAAATTAAGGTTTCAATGCTGGAAAAGTCAACTGCTGGAGCCTGTTCTAACCAAACTTTGAATGTGGAGAAAGAATTAATAGAGCAACAAATGAATTTATGTTCTTCATATGAGGAGAAGAATAGTATTCAAAGGCCAGCGGATGATGGTGTTGTAGAAGAAATGAAGGGAAATGATTCATATAGTTTTTACCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCGATGAACATGAAGTGTTTGCTCCACCATTTTGGGAGTTATGATATGCTTCCACACAGAATAAATGGAAGGATTCTACAATTGGAGACAGTTACTCAGTCTGAGGCCATGAGGAGGCGATATCGATTCCTAAGTCATTTTCCGTTAACCACAACATTTCAGCTTTGTGAAGTTGATTTGAGTGAGTTGTTACCTCCTGAAGCACTGGCTCCATTTATGGATGAAATAAAGAAACGTGCAAATCAGAGAAAACAACTTGCAAAAAAGGAACGGCAGGAAAAAATAAGGGCTGAAGCTACAGGTACTACGCTTCCCATATCATTTAGTAGTCAGCTTACATCTCATGATGATCCTCCAGCATTCTCCATGGATGACTTTGAAGCTCTAGGAAATTCAACTGTTTCCTCAAGTCCTCCCGTAGCTGGGGAGAGAAAATCGTTCTCGAATGTCACGAGACTTGGGTTTGCTGCTGCTCATGATTCTCCATCCTTGCAAATTCAAGAAACTAGTGGTCTACACAAAAATAATACGACAATTGATTCTTCTGCCCCAACAGGTTCGAGAAACGGGGAGACACAGTCATACTCCAATGTTATATCAAGAGCAGAATCAAATATAAGCTCGAATGCACCAAAGACTAATGAGTTGGGGAAGAAAGGTAAAAAGCAAAATCGAGTTCTTCTATCAACAGCTGGAGGTAGACGTTATTGA | 2229 | 0.4253 | MSILPSQTQASSSSSSSAPSPNPNPQHGSGSPLPQQPFPYLSPPLHHALGSLQISGIAGSSTQATEDSGGSSEKVTELGSPSGVTVSPQQNPRTRSRIHGGRRAGMVSSHRNQQAPGSVGSHGSTPLAGRKAQTVNGNYLLNFQYDPISRSQPRGPPPSPAARRHWKRKPYNKDLFLQANYKFMVLDSGNYSPESMDPDKMLQWEDIICVTYLTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLMMGEEDHKGDIWKRCPLCFVMTSAKDLYTVHITNVKQYQVGENVEFTFLTRKKDSFTLTSKNKQETNIISFGNGHFCDPFSKFTLTSDVDLSVRHSISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKWHWNEQKSHDSENSKPIDHAHQIQSMVVNSMDTDDENCSNGSKTSSTDYSDQIKVSMLEKSTAGACSNQTLNVEKELIEQQMNLCSSYEEKNSIQRPADDGVVEEMKGNDSYSFYQAADGQHLILHPMNMKCLLHHFGSYDMLPHRINGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEVDLSELLPPEALAPFMDEIKKRANQRKQLAKKERQEKIRAEATGTTLPISFSSQLTSHDDPPAFSMDDFEALGNSTVSSSPPVAGERKSFSNVTRLGFAAAHDSPSLQIQETSGLHKNNTTIDSSAPTGSRNGETQSYSNVISRAESNISSNAPKTNELGKKGKKQNRVLLSTAGGRRY | 742 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian2g01467 | 742 | PANTHER | RING FINGER 10 FAMILY MEMBER | 63 | 742 | IPR039739 | - | |
Vian2g01467 | 742 | MobiDBLite | consensus disorder prediction | 25 | 41 | - | - | |
Vian2g01467 | 742 | FunFam | RING finger protein 10 | 213 | 281 | - | - | |
Vian2g01467 | 742 | SMART | ring_2 | 220 | 266 | IPR001841 | - | |
Vian2g01467 | 742 | ProSitePatterns | Zinc finger RING-type signature. | 235 | 244 | IPR017907 | - | |
Vian2g01467 | 742 | Coils | Coil | 579 | 603 | - | - | |
Vian2g01467 | 742 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Vian2g01467 | 742 | MobiDBLite | consensus disorder prediction | 54 | 95 | - | - | |
Vian2g01467 | 742 | Pfam | Zinc finger, C3HC4 type (RING finger) | 220 | 266 | IPR018957 | GO:0046872 | |
Vian2g01467 | 742 | CDD | RING-HC_RNF10 | 218 | 275 | - | - | |
Vian2g01467 | 742 | ProSiteProfiles | Zinc finger RING-type profile. | 220 | 266 | IPR001841 | - | |
Vian2g01467 | 742 | SUPERFAMILY | RING/U-box | 219 | 270 | - | - | |
Vian2g01467 | 742 | MobiDBLite | consensus disorder prediction | 107 | 126 | - | - | |
Vian2g01467 | 742 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 213 | 302 | IPR013083 | - | |
Vian2g01467 | 742 | MobiDBLite | consensus disorder prediction | 678 | 720 | - | - | |
Vian2g01467 | 742 | MobiDBLite | consensus disorder prediction | 1 | 126 | - | - | |
Vian2g01467 | 742 | MobiDBLite | consensus disorder prediction | 678 | 742 | - | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian2g01467 | 117 | 693 | C3H Transcription Factor Family | AT3G26730 | 54.195 | 0.0 | 611 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian2g01467 | K26979 | - | gmx:100818033 | 1199.88 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian2g01467 | 2 | 30517395 | 30525955 | Vian2g01467 | 2 | 30517395 | 30525955 | ECH |