Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01463 ATGTTCATCCATAAACATAACAAAGATGATGAGGACCATGGTGTTGTAGAGGCCACAAGTGAAGAATGCATCAAATGGTTAGATGATAAGGAAAAAAGGTTGGTTGTTTATGTTTCTTTTCGGAGTATGGGTGTACTTGATGAGAAGCAAATAGATGAAGTAGCCTATGGTTTGAGAGATTGTGGAAGATACTTCTTGTGGGTGGTTAAAGGCTTCTTCTGGGTGAAGCTTCCAGCTAAGTTTGTGAGCAAATATGGAAATCACTTGCCCAACACAATGTTTCTTAAGCTTCCAAACGATGCAGAATGGGAAGTAAAATTGGAGAAAAGTGATGGCAGTGTTTGGTTTCAGCAAGGTTGGAAAGAGTTTGTGGAGTATCACTGTCTAGCCCATGGACACCTCTTGGTTTTCAGATACAATGGAACATCCCATTTCCATGTACTCATCTGTGATATGAGTTGCATGGAAATAGACTACCCTGTCAACAAGGCAAATCACAAAAGGGTTAGAATTAAGAGTGAAAACATTCAACCACCTAAGACAAAGAAAACAACTGAGAATAAGAAAAGGTGTTGTTCCAATTTGCAAGACACTGCATCCGATGAATTAGTCAGAGACCACAAAGGTATGTTGAAGAATCTAAATGAAGGGAAGAGAAACATGGAAGCTCTTGAGAATACCTTCATGGTGATAATGAAACCAACCTTTTTTACTACTGGGTACATGTATCTGCCAAGAGCAGCAGTGAGGAGCCAAAACAAACGTCGTGAAGAATTTGTTACTCTTGTTGTTGGGGACAGAAGATGGAGGGTTAAATTGGTTCGTTATCCAAATGATTCAGCTTACTTCACTAATTTGTTAGATTTTGCAAGGGACAATAATTTGAAAGAAGGAGATGCTTGCTTTTTCAAACTCATGAACATGGGTGATAACATGGTGATTAAGGTTTCCTTTGTAGCCAGAAACTCCTCTCTAAGAGGACAATAA 987 0.3901 MFIHKHNKDDEDHGVVEATSEECIKWLDDKEKRLVVYVSFRSMGVLDEKQIDEVAYGLRDCGRYFLWVVKGFFWVKLPAKFVSKYGNHLPNTMFLKLPNDAEWEVKLEKSDGSVWFQQGWKEFVEYHCLAHGHLLVFRYNGTSHFHVLICDMSCMEIDYPVNKANHKRVRIKSENIQPPKTKKTTENKKRCCSNLQDTASDELVRDHKGMLKNLNEGKRNMEALENTFMVIMKPTFFTTGYMYLPRAAVRSQNKRREEFVTLVVGDRRWRVKLVRYPNDSAYFTNLLDFARDNNLKEGDACFFKLMNMGDNMVIKVSFVARNSSLRGQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01463 328 SUPERFAMILY DNA-binding pseudobarrel domain 64 153 IPR015300 -
Vian2g01463 328 PANTHER B3 DOMAIN-CONTAINING 64 308 - -
Vian2g01463 328 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 19 83 - -
Vian2g01463 328 CDD B3_DNA 69 151 IPR003340 GO:0003677
Vian2g01463 328 ProSiteProfiles B3 DNA-binding domain profile. 227 322 IPR003340 GO:0003677
Vian2g01463 328 Coils Coil 207 227 - -
Vian2g01463 328 ProSiteProfiles B3 DNA-binding domain profile. 77 153 IPR003340 GO:0003677
Vian2g01463 328 Pfam B3 DNA binding domain 230 316 IPR003340 GO:0003677
Vian2g01463 328 Pfam B3 DNA binding domain 75 151 IPR003340 GO:0003677
Vian2g01463 328 SMART B3_2 228 322 IPR003340 GO:0003677
Vian2g01463 328 SMART B3_2 65 153 IPR003340 GO:0003677
Vian2g01463 328 CDD B3_DNA 228 316 IPR003340 GO:0003677
Vian2g01463 328 Gene3D - 210 323 IPR015300 -
Vian2g01463 328 Gene3D - 63 154 IPR015300 -
Vian2g01463 328 SUPERFAMILY DNA-binding pseudobarrel domain 227 315 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01463 Vian-Chr2 30418582 30424343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01463 75 317 B3 DNA Binding Superfamily AT3G18990 25.079 6.04e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian2g01463 B3 4.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01463 - - vum:124844820 642.499