Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01449 ATGTCAATATTGAGGAAAGAACTCCATAAGCTACTTGCACTATCATCTGGAACTTCAAATCACCAGTCACTACAAAATATTGTGATACAGCTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATTGAGCCTGAACCTTATGAAGAAGGTGAACATCTAGTTCAGGCCAGTGGTAAACTACTTATTCTGGACCAACTTCTTCAGAAGTTACATTATTCTGGACACCGTGTTCTTCTTTTTGCTCAGATGACCCATACACTTGACATTTTGCAAGATTTTCTGGAGTTGCGAAAGTATTCTTATGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCTATAAGAAGTTTCAGTAGCTCATCAACTACTTCAGGCTTGACTTCTGAAGCTGAACAAAATGGAGCGTTTGTGTTTATGATCTCAACACGAGCAGGGGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTACAGAGAGCACATAGAATTGGCCAGATGAACCATGTGTTGTGTATAAACCTTGTTACAGAGAAGACAGTGGAGGAAGTAATTATGAGGAGGGCAGAAAGAAAATTGCTTCTGAGCATCAATGTTACTGGTGATAACATTCTCAACCATGATGATGAAGAAACATCTGAAGTTGGAACTGGAGATTTGAAATCCATCATATTTGGTTTACATATGTTAGATCCCACTGAGATTACTGACGGAAATCATAGGGATATCAACTTATCAGAAATTAGTGTTATGGCTGACAAGGTGCTTGCCTTGCGTGACAAACAAATACGCGATATGGATGATAGGAAATTTGAGGTCAGTCCAAGAAACATTTTACAAGGTGATGATGTTAAGGAAGGAGGTACTACTTTTTCTCACGATCTTGGTCTTGACGAGGCTTCATATCTTTCTTGGGTTAACAAGTTTGAGGAAGTGTCTAAGTCAAGTTGCAACTCAATGATGGACTGGAGGAGCAAAAGAAACTCAGAAGAGGAAAAGAATCTAAAACTTGAGTCTGCAATGAAGAAGGCAGAGGAAAAGAAGCTATCCAGGTGGAAAGCTCTTGGATATCAATCATTGAATGTAAAATATCCTCTCACCCAAACAGACAATGACATTACATCAGCTACTGGGTCCGTTCATTTTGTGTATGGAGATTGTACAGCTCCATCAAATGTTTGTTCATCTGAACCAGCTATGATTTTCAGCTGTGTTGACACGTCTGGACATTGGGGCCACGGTGGAATGTTTGATGCACTGTCCAAACTTTCTACAAGCATTGGTGATGCATATGAACGGGCTTCTGAGCATGGGGATCTGCATCTTGGTGATCTGCATCTTATAAGGCTTGATGATGGTTGTCAAGAACAAGATATGACTGGAAATACTCCCAAGATGGTTGCGTTGGCTGTGGTTCAATCATATAATCCAAGGCGCAAAATTCCACGCAGTGAAATCTCACTTCCCCATTTGGAAAGCTGCTTATCTAAGGCAGCATTCTCAGCTGCTCAGAATTCTGTACCTTGA 1587 0.4096 MSILRKELHKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSTTSGLTSEAEQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEKTVEEVIMRRAERKLLLSINVTGDNILNHDDEETSEVGTGDLKSIIFGLHMLDPTEITDGNHRDINLSEISVMADKVLALRDKQIRDMDDRKFEVSPRNILQGDDVKEGGTTFSHDLGLDEASYLSWVNKFEEVSKSSCNSMMDWRSKRNSEEEKNLKLESAMKKAEEKKLSRWKALGYQSLNVKYPLTQTDNDITSATGSVHFVYGDCTAPSNVCSSEPAMIFSCVDTSGHWGHGGMFDALSKLSTSIGDAYERASEHGDLHLGDLHLIRLDDGCQEQDMTGNTPKMVALAVVQSYNPRRKIPRSEISLPHLESCLSKAAFSAAQNSVP 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01449 528 CDD SF2_C_SNF 53 196 - -
Vian2g01449 528 Gene3D Leucine Aminopeptidase, subunit E, domain 1 396 528 IPR043472 -
Vian2g01449 528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 64 241 IPR001650 -
Vian2g01449 528 Coils Coil 347 367 - -
Vian2g01449 528 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 2 289 IPR031053 GO:0003678|GO:0006281|GO:0006338
Vian2g01449 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 234 IPR027417 -
Vian2g01449 528 FunFam Putative helicase CHR10 1 294 - -
Vian2g01449 528 Gene3D - 1 290 IPR027417 -
Vian2g01449 528 SMART helicmild6 90 185 IPR001650 -
Vian2g01449 528 SUPERFAMILY Macro domain-like 400 525 IPR043472 -
Vian2g01449 528 Pfam Helicase conserved C-terminal domain 61 185 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01449 Vian-Chr2 30194687 30209059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01449 59 212 RAD5 or RAD16-like Gene Family AT5G22750 35.714 2.04e-21 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01449 K20092 - gmx:100797182 827.78