Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01443 ATGATACTCCTCGCCGGAAATGAACTCACCGCCGGCGAACCCGACCAAACGCGCCGGCAAATTTTCGACCACAACTTTGCCATGTTAACTGACCCCATTCTACATGGCTCAACACCAACACCCACCACTGCTTTCTCGGTTCACCACCCCTTCAACCCACCACCACAACAGCAGCACCACCATCACAACCCCCAGCAGCACTTCTTCGACCCACGCGCCTTCCAAAGCGCGTCCTCCGCTTCCTTCTCGCCACCACCTTCGGTGCTCTCACTTAACCCAATCCCACCTCTGGCTCCCTCCCACTGTGGACTTGGGCCTGGCTCCGGGCTTGGGTTTCTGCTCATGTCCAAGTCTGAGGATGTGACTTCGCCCATTAACTTTGAGTGCTCTGGTCATGGTCTCGGGCCTGGACCCGGGCTTGGACTCAACCTCGGTGGTCGCACTTATTTTGCCGCTTCCAACGAAGACATCCTGGACAGATTCTACCGTTGCAAGACGGTGGAATCGGTTTCCACCGTGGCGTCAAATTTGCCACGCTGTCAAGCAGAAGGTTGTAACACGGACCTCTCCGAAGCCAAGCACTACCACCGCCGCCACAAGGTGTGTGAGTTCCACTCCAAGGCCGCCACCGTCATTGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGGTTGTGGTCTTTAGGGGAGGGGGTTTTACACAATTACGAATTTGCAACTGGCCGTTGTAGTTTGAACCAATCATTGGCTTCGGGATTCCATCTTCTTTCAGAATTTGACAATGGGAAACGGAGCTGCAGGAAGAGACTGGCAGATCACAATCGTCGCAGAAGAAAAACTCAGCAGGCAACTCAAGACATTCACAAATCTCAGCCTTCTTTGGACAATGTTACATGGTCCTCTTCTGAATCTGGAGCTCAATCTTCGTCATCAATGAAGGTGGCAGTGTCACCCCCAGATTATTTTCAGCAAAATAGAGGCACTTCGTCAACATCATCATCTGGGTCATTGTTTTTCTCAATGGCGTTTGGGTATCAGAGAAAGTCGGGGGCAGCTGAGCAGAAGTGTTCAGACTACTGCCCTAGGGCACCTTCATTTTGTGGCATTGACTTTGTCTGCCCTGGAATTTCTCTGAAATATGCAGCAATTATATGCATTACTCACCCATTCCATTATACAGATGTTGGAAAATCTACCCACACCAATTTCTAG 1218 0.5164 MILLAGNELTAGEPDQTRRQIFDHNFAMLTDPILHGSTPTPTTAFSVHHPFNPPPQQQHHHHNPQQHFFDPRAFQSASSASFSPPPSVLSLNPIPPLAPSHCGLGPGSGLGFLLMSKSEDVTSPINFECSGHGLGPGPGLGLNLGGRTYFAASNEDILDRFYRCKTVESVSTVASNLPRCQAEGCNTDLSEAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRLWSLGEGVLHNYEFATGRCSLNQSLASGFHLLSEFDNGKRSCRKRLADHNRRRRKTQQATQDIHKSQPSLDNVTWSSSESGAQSSSSMKVAVSPPDYFQQNRGTSSTSSSGSLFFSMAFGYQRKSGAAEQKCSDYCPRAPSFCGIDFVCPGISLKYAAIICITHPFHYTDVGKSTHTNF 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01443 405 Gene3D - 175 269 IPR036893 GO:0003677|GO:0005634
Vian2g01443 405 ProSiteProfiles Zinc finger SBP-type profile. 177 282 IPR004333 GO:0003677
Vian2g01443 405 SUPERFAMILY SBT domain 253 285 IPR036893 GO:0003677|GO:0005634
Vian2g01443 405 MobiDBLite consensus disorder prediction 40 62 - -
Vian2g01443 405 MobiDBLite consensus disorder prediction 287 314 - -
Vian2g01443 405 MobiDBLite consensus disorder prediction 40 66 - -
Vian2g01443 405 Pfam SBP domain 253 281 IPR004333 GO:0003677
Vian2g01443 405 Pfam SBP domain 180 231 IPR004333 GO:0003677
Vian2g01443 405 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 174 344 IPR044817 GO:0003677
Vian2g01443 405 MobiDBLite consensus disorder prediction 273 314 - -
Vian2g01443 405 SUPERFAMILY SBT domain 178 232 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01443 Vian-Chr2 30072730 30075269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01443 140 227 SBP-box Gene Family AT1G02065 68.889 7.94e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vian2g01443 SBP 9.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01443 - - var:108328505 599.356