Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01428 ATGGAGTTTAGTCCAAGCTTCCCTGAGAAAATTCACTACCTTTCTGGGATTTTCCCTGAAATCAAAACAGAGATTCCTGTGTCAGAAGAGAACAGCAGCTTCATGTACCAAAACAATTTCAACCATTTTCAGCAGCACCATCACCTGAACGAGTCAAACCATGGCCAGCCTGAAAGTTTTTTCACAGAGGGTTCTTCCTCCATCATTACCCCATTATTCTCTTTGTCCTCAGCAGCCCATTCTTCAGGTGGCCCATCTTCCTACAAATCCACTTACCCCAATGAGTCCCTGAAGGGAGGGTATGCCAACCCCTACTACCCCATGGCCTATGCACCAAACAACACCAATGCTCAATCCATGCATGGTCACCCCAACAAGGTCATCTGGGACTTTTCCCAGAAATCTCCCGTTCACTCTGGCCCAAGTGCAACTTCAGATCCTCAGTTTCATATGAGGCTTTTAATGAAAATTTTCCTCATTGATTTAGGTCCTGTCTTTAGTGAGCGTCCTTGTCCAATTGGTCAAACGCTTCGGGATCAAAAAATGGTCGCACATCGCCAGGTTGCTGAATGGCAGGGTTGGGAAACAGTGCAGAGAGAGAAGGAGTCATGGAGCGAAGAGGAGGACAAAATCCTGATCGAAGCTCACAAGGAACTCGGGAACAAATGGGCAGAGATTGCAAGGAGAATGCCGGGAAGGACCGAAAACACCATCAAGAACCACTGGAACGCCACCAAGCGTCGCCAGAAAGCCAAGAGGCAGAGGAACAAGCGCAGGAGCTCCAAGGGGTCACCCACGCTACTCGAGAGCTACATAAGGAAAGTCACTGCGGCGGAAGAATCTGAGAAGGAGTTGAAGAACTCCATGAGCAAGATGAACCTGAATGACACCACCAAAACGGGTCTCTTTCGGGTTCGGTACGAGAGCTCCGAAGGTGACTTCAGCTCCGAGGAGGAGGAGCTTGGCTGGACCCTGCAGCACCACGTGCCATGTGGTGGCGATGGTGGTTATGTGCCAGTGATGGTGAACGCTGGGGAAGAGAGCGCCATTGATTATGAGGTTGCCATGCAGATGGTACCAGAGGTCCAGATGAGGAAGGAGATGGATCTCATGGAGATGATCTATAGAAAAGGTTAA 1137 0.496 MEFSPSFPEKIHYLSGIFPEIKTEIPVSEENSSFMYQNNFNHFQQHHHLNESNHGQPESFFTEGSSSIITPLFSLSSAAHSSGGPSSYKSTYPNESLKGGYANPYYPMAYAPNNTNAQSMHGHPNKVIWDFSQKSPVHSGPSATSDPQFHMRLLMKIFLIDLGPVFSERPCPIGQTLRDQKMVAHRQVAEWQGWETVQREKESWSEEEDKILIEAHKELGNKWAEIARRMPGRTENTIKNHWNATKRRQKAKRQRNKRRSSKGSPTLLESYIRKVTAAEESEKELKNSMSKMNLNDTTKTGLFRVRYESSEGDFSSEEEELGWTLQHHVPCGGDGGYVPVMVNAGEESAIDYEVAMQMVPEVQMRKEMDLMEMIYRKG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01428 378 Coils Coil 268 288 - -
Vian2g01428 378 SMART sant 200 248 IPR001005 -
Vian2g01428 378 Gene3D - 203 266 - -
Vian2g01428 378 MobiDBLite consensus disorder prediction 238 268 - -
Vian2g01428 378 MobiDBLite consensus disorder prediction 243 260 - -
Vian2g01428 378 CDD SANT 203 246 IPR001005 -
Vian2g01428 378 SUPERFAMILY Homeodomain-like 191 252 IPR009057 -
Vian2g01428 378 PANTHER MYB PROTEIN-RELATED 200 264 - -
Vian2g01428 378 Pfam Myb-like DNA-binding domain 201 243 IPR001005 -
Vian2g01428 378 ProSiteProfiles Myb-like domain profile. 196 246 IPR001005 -
Vian2g01428 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 250 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01428 Vian-Chr2 29705723 29710023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01428 129 275 MYB Transcription Factor Family AT4G18770 42.857 6.73e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian2g01428 Myb_DNA-binding 1.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01428 K09422 - gmx:100805329 303.523