Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01427 ATGGCCTCTACTATTGGTAAACCGGGTGATGATTCCATGATAGTTGAAAAGCTCCCGGAGGAGATTAATGAAATGAAAATCAAGGATGAAAAGGAAATGGATACTGCAATGGTGGATGGAAATGGAACTGAAACTGGCCGTATTATTGTGACCACTATTGGTGGTCGACAAGGTCAACCTAAACAGACTATAAGTTACATGGCAGAACGTATTGTTGGACAAGGCTCATTTGGTATTGTGTTTCAGGCTAAATGTCTTGAAACTGGAGAAACTGTAGCAATCAAGAAAGTTTTGCAGGATAAAAGATACAAGAATCGCGAATTGCAAACAATGCGCCTTCTTGATCATCCCAATGTTGTATCACTAAAACATTGCTTCTTTTCTACCACAGATAAAGATGAACTCTATCTCAATTTGGTACTTGAATATGTACCTGAGACTGTATATCGTGTGGTGAAGCACTATAGCAAGGCAAATCAGCGGATGCCCCTAATATATGTTAAACTTTACACATATCAGATTTGTAGAGCCTTGGCTTATATTCATGGATGTGTTGGAGTGTGCCACAGGGACATTAAGCCACAGAATCTGCTGGTAAATCCTCATACACATCAGGTCAAACTTTGTGATTTTGGGAGTGCAAAAGTTCTGGTCAAGGGTGAACCTAACATATCGTATATCTGCTCTCGATACTATCGAGCTCCTGAACTCATATTTGGAGCCACTGAGTATACTACTGCAATTGATATGTGGTCTGTTGGTTGTGTCCTGGCTGAGCTGCTCCTGGGGCAGCCTCTGTTTCCAGGAGATAGTGGAGTTGATCAACTTGTTGAAATTATCAAGGTACTCGGGACTCCCACTCGTGAGGAAATAAAATGCATGAATCCAAATTACACAGAGTTCAAGTTCCCTCAAATCAAGGCTCACCCCTGGCATAAGATATTCCACAAGCGTATGCCCCCAGAAGCAGTAGATCTTGTTTCAAGGCTTCTCCAGTATTCTCCAAATTTACGAAGTACTGCTTTGGATGCATGTGTTCACCCATTTTTTGATGAACTCCGCGACCATAATACCCGTCTCCCTAATGGGCGCCCTATGCCACCCCTCTTTAATTTCAAACCTCAAGAGCTGAAGGGAGTGACTTTGGAGCTACTATGCAAACTTGTTCCAGAACATGCTCGGAAACAGTGTCCATCCCTTAATTTCTAG 1209 0.4227 MASTIGKPGDDSMIVEKLPEEINEMKIKDEKEMDTAMVDGNGTETGRIIVTTIGGRQGQPKQTISYMAERIVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDELYLNLVLEYVPETVYRVVKHYSKANQRMPLIYVKLYTYQICRALAYIHGCVGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGDSGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALDACVHPFFDELRDHNTRLPNGRPMPPLFNFKPQELKGVTLELLCKLVPEHARKQCPSLNF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01427 402 Pfam Protein kinase domain 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01427 402 Gene3D Phosphorylase Kinase; domain 1 50 145 - -
Vian2g01427 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Vian2g01427 402 SUPERFAMILY Protein kinase-like (PK-like) 65 375 IPR011009 -
Vian2g01427 402 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 30 396 - -
Vian2g01427 402 CDD STKc_GSK3 61 353 IPR039192 -
Vian2g01427 402 ProSitePatterns Protein kinases ATP-binding region signature. 72 96 IPR017441 GO:0005524
Vian2g01427 402 ProSiteProfiles Protein kinase domain profile. 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01427 402 FunFam Glycogen synthase kinase-3 beta 50 145 - -
Vian2g01427 402 Gene3D Transferase(Phosphotransferase) domain 1 146 394 - -
Vian2g01427 402 SMART serkin_6 66 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01427 402 FunFam Shaggy-related protein kinase kappa 146 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01427 Vian-Chr2 29677015 29683523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01427 72 358 Core Cell Cycle Gene Families AT1G76540 34.915 4.52e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vian2g01427 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01427 K00924 - vvi:100261256 763.066