Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01418 ATGCTTGCACTGCAATTTGGCACGCGCCCTCACTACCCTCCTTCGATGTTCCTGAGCAGTTCCAACGTTTGTTCATCCTCTCGCATCCTCTACAGCAACAGAAACAACCAGGGGTACCTTGTTCGCTCCAACGTTGGAACCCTCAACCTTAGAGTTTTCGCTGCGTCTGGCAACTCCTCATATAAGATGAACCTCAACGAGTACCTCGTCACTCTCGAGAAGCCCCTCGGCATTCGGTTCGCGCTAACCGCCGATGGCAAAATCATCGTCCACTCTCTCACCAAAGGGGGTAATGCAGAGAGGTCCAGGATAATTATGGTAGGTGATACTTTGAAGAAAGCTGGCGATTCGTCTCAGAACACTCTCGTTGAGATTAAAGACGTTGGAAATACACAGAAGGTGCTAAATGAGCAAACAAGTTCTTTTAGTTTGGTTCTTGAGAGGCCCACATCTCCTTTTCCTATTCAAGTACTGCACAAGATGAATGATCTCGAGATAGTCTTTAATAGAGGGCGAGTTCCTATTGTCACATGGAACAAGACCCTATTGGCATCAAATTTACAATCATCTAGTGAGAGCAGTGCGAATTCTGGATTTTTGATGTTCAACTCAAAGTTTCTCAAACCAAACGCAAACAAGTTATTGGGCAACCAAAATCAACGTACCATCACCCATGGTGAGAGAAACTTCTTTGCTGAACACACACCACAAATTGCTTGTGTTTTTACTGAAGAAGTGTGTGGAGATGGAGATTGGGGTCATGGAAGTTTCCCACTCGAGGAGTATATTCAGGCTCTAGATCGTTCCAAGGATGAGATGTATTATAACCACTCTCTTGGTATGCGTTATAGTAAGATTACAGAGCAAATATATGTGGGATCCTGTATACAAACAGAAGATGATGGAGAGACGTTGTCAAAAGTTGAGGGAATTACTGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCCGAAAATTGGGGAATCAATGCAAAATCAATCAATGAATCTTGTCAAAGGAATAATATTCTCATGATCAACTATCCTATTCGGGAGGGAGATTCTTATGATATGAGGAAAAAACTCCCATTTTGTGTGGGGCTTCTACTACGTTTGCTAAGGAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGATCTCCTGCATGTGTGATTGCCTACCTACATTGGATGACGGATGTTTCCCTTCATGCAGCATATACTTGGGTAACTGGGATGCACAATTGCAGACCTGACAGGCCGGCAATTGCATGGGCTACTTGGGATCTTATAGCCATGGTTGAAAATGCCAAACATGATGGACCTCCTACACATTCTGTCACATTTGTGTGGAATGGTCATGAGGGTGAGGATGTAACTTTGGTTGGAGACTTTACCGGAAATTGGAAAGAACCACTAAAGGCAAAGTTCCAAGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATTGTAAATGGGCAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGACAGGGGAAACGTTAACAATATAATTGTGATTGGTGAAACTGCCAATGTTCGGCCTTCTATTCAGCACCAGCTGAAAGATGCTAACGTTGTCAAGGTGATTGAGAGGCCTTTGAATGAAAAGGAGCGGTTTATGCTGGCAAAAGCAGCTCGTTGTATTGCTTTCTCTATCAGTCCGATCACTTTGGCCCCCAAATAG 1749 0.434 MLALQFGTRPHYPPSMFLSSSNVCSSSRILYSNRNNQGYLVRSNVGTLNLRVFAASGNSSYKMNLNEYLVTLEKPLGIRFALTADGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSQNTLVEIKDVGNTQKVLNEQTSSFSLVLERPTSPFPIQVLHKMNDLEIVFNRGRVPIVTWNKTLLASNLQSSSESSANSGFLMFNSKFLKPNANKLLGNQNQRTITHGERNFFAEHTPQIACVFTEEVCGDGDWGHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDGETLSKVEGITAVLNFQSGTEAENWGINAKSINESCQRNNILMINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHNCRPDRPAIAWATWDLIAMVENAKHDGPPTHSVTFVWNGHEGEDVTLVGDFTGNWKEPLKAKFQGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDDRGNVNNIIVIGETANVRPSIQHQLKDANVVKVIERPLNEKERFMLAKAARCIAFSISPITLAPK 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01418 582 CDD E_set_AMPKbeta_like_N 448 528 - -
Vian2g01418 582 ProSiteProfiles Dual specificity protein phosphatase domain profile. 282 438 IPR020422 GO:0006470|GO:0008138
Vian2g01418 582 Pfam Dual specificity phosphatase, catalytic domain 291 412 IPR000340 GO:0008138|GO:0016311
Vian2g01418 582 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 272 420 IPR029021 -
Vian2g01418 582 Gene3D Protein tyrosine phosphatase superfamily 275 546 IPR029021 -
Vian2g01418 582 Gene3D Immunoglobulins 436 532 IPR013783 -
Vian2g01418 582 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 52 580 - -
Vian2g01418 582 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 436 532 - -
Vian2g01418 582 SUPERFAMILY PDZ domain-like 72 165 IPR036034 GO:0005515
Vian2g01418 582 Pfam Glycogen recognition site of AMP-activated protein kinase 448 531 IPR032640 -
Vian2g01418 582 SUPERFAMILY E set domains 446 529 IPR014756 -
Vian2g01418 582 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 275 442 - -
Vian2g01418 582 CDD DSP_laforin-like 281 427 IPR045204 GO:0019203
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01418 Vian-Chr2 29201371 29232793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01418 134 582 Protein tyrosine phosphatase (PTP) family AT3G01510 68.820 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01418 - - gmx:100814503 1056.97