Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01417 ATGAAAGAAACAACAAGAATGGACCCAACCCAAGAATCTGGAACTTACATAGATCATTACGAATGGAAGAATGCTATACCCTACCACAAACTCTGCTGCAAGGTTGAGGAGAGGAAGCAAGCATGGCCAAAGATAAAGAAAAAGAATAAGTGTGCAGCATGCTTCAGACAGTTCAACAAACTGGAGCACCTTGTGGAGCACATGAGGATCTCGTATCATTCAGTTCATGAGCCAACCTGTGGCATTTGCAGGAAACACTGCAGGTCATTTGAGTCTCTAAGGGAACATCTCATAGGTCCATTGCCAAAGCAGGAATGCAGAGATATATTTGCCTATAGAGGGTGCAAGTTTTGCTTGAAAGTGTTTGACAGCCCTAATTCTCGCAGGATTCACCAAGAAAAATGCCAACACTCTGGAACAAATGCTGGAATAATTGGTCGCTTTTCAAACTTAGGACTTCGTGATAATTTGGCCATTAGTGGTGGAGCAAGAGGACCACAAGTAGTTGCATTAGCATGTAAAATGGTTGGAGGTGGCAGTGATGGCTCACTGGATCTCTTTCAAAGGAGGATTCAAGATTTTCTTTGCAACGGTGAACCTATGTGGACAATTCGGGCAAGAGGAGGAAGAGCAAGGATTCTTGTGGGCCATGGTTTGGATCATGACCTTGAATGTCTGCAAATAGAATATCGAACAGAAAAGATAAGGTATGACATTCAAGTTGGAATTCAGGATCCTTATGATGACTGTGTGGCAACTATGAGGCTCTACATGAGAATGAGATCCCAACTACACAGAACACAGGATTACCCTTTGGTTTCTGACCCCCAGAACAGGAACAATTTTGCTTCGTGGAGGCAAAGTGAGCTTGAAAGAATGACTCCTGAACAGATGCTGGAAATATCAAGATCTGACTACTATTGCTGGTGCTTTGATTCCTTGTATCCCTGA 951 0.4311 MKETTRMDPTQESGTYIDHYEWKNAIPYHKLCCKVEERKQAWPKIKKKNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCGICRKHCRSFESLREHLIGPLPKQECRDIFAYRGCKFCLKVFDSPNSRRIHQEKCQHSGTNAGIIGRFSNLGLRDNLAISGGARGPQVVALACKMVGGGSDGSLDLFQRRIQDFLCNGEPMWTIRARGGRARILVGHGLDHDLECLQIEYRTEKIRYDIQVGIQDPYDDCVATMRLYMRMRSQLHRTQDYPLVSDPQNRNNFASWRQSELERMTPEQMLEISRSDYYCWCFDSLYP 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01417 316 ProSitePatterns Zinc finger C2H2 type domain signature. 51 73 IPR013087 -
Vian2g01417 316 ProSitePatterns Zinc finger C2H2 type domain signature. 115 137 IPR013087 -
Vian2g01417 316 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 48 183 IPR047021 GO:0004527
Vian2g01417 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 78 IPR013087 -
Vian2g01417 316 SMART c2h2final6 49 73 IPR013087 -
Vian2g01417 316 SMART c2h2final6 113 137 IPR013087 -
Vian2g01417 316 SMART c2h2final6 78 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01417 Vian-Chr2 29190196 29192318 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01417 48 314 C2H2 Transcription Factor Family AT3G27970 56.268 3.21e-138 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g01417 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01417 - - aprc:113862359 502.671