Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01413 ATGACAGTTAGACTTGAAGAATGGAGGATTCGGAAAAGAGATACCGAGGAGTGGATGAGGCATCGCCAGTTACCACCACATTTGCAGCAACGTATCCGTCGTTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTTGATGAAGAAGCCATAATGCTTTCGTTACCTTTGGATCTTCGTCGAGAAATTCAACATCACTTGTGTCTTTCTCTCGTGCGGCGTGTCCCCTTTTTCTCCCAAATGGACGATCAACTTCTTGATGCAATTTGTGAACGTCTTTCATCATCACTAAGCACTGAAGGCACCTACATATTTCGAGAGGGTGATCCGGTGGATGAAATGTTGTTTATCATCAGAGGGCAATTGGAGAGTTCCACGACCAACGGAGGAAGGTCTGGATTCTTCAACTGCATCAAACTCAGGCCTGGTGACTTTTGCGGAGAGGAATTGCTGACATGGGCCCTAATGCCAAACTCAACCCTCAACCTACCTTCTTCTACTCGAACTGTCAAAGCTCTTTCTGAAGTTGAAGCTTTTTCACTACAAGCAGAGGATCTTAAATTTGTGGCAAGTCAGTTCAAGCGCCTTCACAGCAAGAAACTGCAGCATGCGTTTAGGTATTATTCCCATCAATGGAGAACATGGGGTGCTTGCTTCATACAAGCTGCTTGGAGACGATATCAGAAAAGAAAGGCAACAAGGGAGTTATCCCTGAAAGAGGGTCTCTACTACCTGTCTTTGCCTGAGACGGAAGAAAGTGGACATTTGGAGGATGATGAAACCGGGGAATCCTCAGGGATAACGAAAAAGGTTCAGAATCTTGGTGCAACTGTCTTGGCATCAAAGTTTGCTGCCAATACAAGGAAAGGAGCACATAAACTACCCGATCCTGTGCCCCAGTTGTTCAAGCCAGACGAACCTGATTTTTCTTTAGACCATGAACTTTAG 948 0.4504 MTVRLEEWRIRKRDTEEWMRHRQLPPHLQQRIRRFVQYKWLATRGVDEEAIMLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLSSSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNCIKLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALSEVEAFSLQAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGACFIQAAWRRYQKRKATRELSLKEGLYYLSLPETEESGHLEDDETGESSGITKKVQNLGATVLASKFAANTRKGAHKLPDPVPQLFKPDEPDFSLDHEL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01413 315 SMART cnmp_10 77 208 IPR000595 -
Vian2g01413 315 Gene3D Helix hairpin bin 5 68 - -
Vian2g01413 315 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 309 - -
Vian2g01413 315 Pfam Cyclic nucleotide-binding domain 100 188 IPR000595 -
Vian2g01413 315 FunFam Cyclic nucleotide-gated ion channel 1 75 193 - -
Vian2g01413 315 MobiDBLite consensus disorder prediction 289 315 - -
Vian2g01413 315 FunFam Cyclic nucleotide-gated ion channel 1 4 68 - -
Vian2g01413 315 SUPERFAMILY cAMP-binding domain-like 7 202 IPR018490 -
Vian2g01413 315 Gene3D Jelly Rolls 75 195 IPR014710 -
Vian2g01413 315 ProSiteProfiles cAMP/cGMP binding motif profile. 77 207 IPR000595 -
Vian2g01413 315 CDD CAP_ED 77 208 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01413 Vian-Chr2 29125290 29126375 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01413 1 314 Ion Channels AT5G14870 71.513 2.70e-172 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01413 K05391 - gmx:100802812 559.681