Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01407 ATGGAGATTGTAGGATACGGTTTTCGTCCCACCGATGAAGAACTTGTCCACTTTTACCTCAAACACAAGTTGCTAGATGATGATCCCCGTGTCCATGTCATGACTGATATAGATCTTTGCGATGTGGAACCTTGGGAAGTACCAGAGATGTTAGCAAAATCAGTAATACCATTCAAAAACTCAGAATGGTTTTTCTTCCGTCGTGTTCGGTTGAAATACTCAAATAGTGAAAGGTTTAACAGGACAACCATGAGTGGGTTCTGGAAACCCACGGGAAAACCCCGTGATGTTAGAACAGGGGACACCAACACTGTCATTGGGACTAAGAAGACTCTTGTTTTCCATAGTGGTCGTGCTTCCAAAGGTGTCAATTCCAACTGGGTTATTCACGAATATCATGCTCTTAACTCTCTCCAAAGCCAGAATGCTTTTGTGTTATGCCGCTTGAAAAAGAAACATGGGAAAACGACCGAAGGAGGAACTGCTGCACTGATATGTGATGAAGAGGAATCCAGTAGAAGCGTGGTTTCTGACACTGAAAATCAGGCAATAGCAGAAGGAGTTCCATCTGGAGATACTTTTAGCAGAATGGAAACAATCTGTCAGTTAACATATCAGGCAGAAAAAAATATCTCCCCAGCAGAACAGTCTCTAATTGATATTGAGCAGGATGAAGCATCTTTCCCAAACCCATCTAACGATGCCTATTTTAGAAAGGAAAACAACAATAGGCATATCCCATATGCACAGACTCCATTTGAAGCTATGCATACTTCTTTAGGATCTACCCAAAATCCATTTGAAGTTGGATCTATGTTAACTCTTTTTGAAACTACACAACCTTCATTTGAAACTACAAATACTCCTTTTGAAACTATGGAGACTCCTTTTGATACTATGGAGACTCCTTTGGGAGCTATGTATACTTCATTTGAAACTACGCAGACTTCTTTAGGATCTATGTTAACTCCTTTAGAAACTACACAACCTTCATTTGAAACTATAAAGACTCCTTTTGAAATTAGGGAGATTCCTTCTGATACTATGGAGACTCTTTCAGGAACTATGCAGTCTCCTTTGGGAGCTATGCAGAGTCCTTTAGGAGCTATGTATACTTCATCTGAAACTACGCAGACTTCTTTAGGATTTATGTTAACTCCTTTAGAAACTACACAACTTTCATTTGAAACTATAAAGATTCCTTTTGAAACTATGGAGACTCCATTTGATACTTTGGAGTCTCTTTCAGGAGCTATGCAGTCTCCTTTGGGAGCTATGCAAACTCCTTTAGGAGCTATGTATACTTCATTTGAAACTACGCAGACTTCTTTAGGATCTATAACACCTTTCGAAACTACACATCCTTCATTTGAAACTACAAATACTTCATTTGAAACTACAAATACTCCTTTTGATACTAGGGAGACTCCTTTGGGAGCTATGTATACTTCATTTGAAACTACACAAACGTCTTTAGGATCTATGTTAACTCCTTTTGAAACTACACAAACTTCATTTGAAACTTCGAAGTCTTTGGAAACTCCTTTTGAAACTATTGAGACTCCTTTAGGAGCTATGTATACTCCACCTGAAATGATTCATCCTCCATCTGAAACTACGCAGATTCCTTTAGGATCTATGCAGACTTCATTAGGATCTACGCATATTCCTTTAGGATCTATGCAGATTCCTTTTGAAAGTAGGAAAATTCCATTTCAAAATACACATACTCCATCGGAGACTCCTTTTGAGTTCCCTAAATCATTGAAAAGGGCATATTGTGAAAGCACTTGCATAAATCCAGAAGTCGTCCTTAAACTGGACGCTTGTATTGATGATAGTTCAACTATGTGTACTAAATATCTTAATTCAGATGAATACCATTCATCAAAAATGTTTAAAACATCATATGATGTTGTAAATGGTGACACACATCTTCTATTTTCGAACCAAGAAGCAAGTCAGAAACAAGAAAGTATATTTCAAGACAATTTACGGGGAATGGAGACATCCTCATGTGACTCTACAGTATATAATCCTGAAGAGATCAATTGGAATGAAATATCTAGTTTTCCTTGCACTTAA 2085 0.3784 MEIVGYGFRPTDEELVHFYLKHKLLDDDPRVHVMTDIDLCDVEPWEVPEMLAKSVIPFKNSEWFFFRRVRLKYSNSERFNRTTMSGFWKPTGKPRDVRTGDTNTVIGTKKTLVFHSGRASKGVNSNWVIHEYHALNSLQSQNAFVLCRLKKKHGKTTEGGTAALICDEEESSRSVVSDTENQAIAEGVPSGDTFSRMETICQLTYQAEKNISPAEQSLIDIEQDEASFPNPSNDAYFRKENNNRHIPYAQTPFEAMHTSLGSTQNPFEVGSMLTLFETTQPSFETTNTPFETMETPFDTMETPLGAMYTSFETTQTSLGSMLTPLETTQPSFETIKTPFEIREIPSDTMETLSGTMQSPLGAMQSPLGAMYTSSETTQTSLGFMLTPLETTQLSFETIKIPFETMETPFDTLESLSGAMQSPLGAMQTPLGAMYTSFETTQTSLGSITPFETTHPSFETTNTSFETTNTPFDTRETPLGAMYTSFETTQTSLGSMLTPFETTQTSFETSKSLETPFETIETPLGAMYTPPEMIHPPSETTQIPLGSMQTSLGSTHIPLGSMQIPFESRKIPFQNTHTPSETPFEFPKSLKRAYCESTCINPEVVLKLDACIDDSSTMCTKYLNSDEYHSSKMFKTSYDVVNGDTHLLFSNQEASQKQESIFQDNLRGMETSSCDSTVYNPEEINWNEISSFPCT 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01407 694 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 233 - -
Vian2g01407 694 ProSiteProfiles NAC domain profile. 2 152 IPR003441 GO:0003677|GO:0006355
Vian2g01407 694 Pfam No apical meristem (NAM) protein 4 133 IPR003441 GO:0003677|GO:0006355
Vian2g01407 694 Gene3D NAC domain 11 156 IPR036093 GO:0003677|GO:0006355
Vian2g01407 694 SUPERFAMILY NAC domain 4 152 IPR036093 GO:0003677|GO:0006355
Vian2g01407 694 MobiDBLite consensus disorder prediction 446 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01407 Vian-Chr2 28994200 28997217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01407 4 195 NAC Transcription Factor Family AT3G49530 41.784 1.76e-42 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian2g01407 NAM 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01407 - - vra:106778155 1139.41