Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01403 ATGATGCCTGTTCTAGAACACTTGGACTTCTCCATAGAGGAAAATCAAGTCGTTGCCATTGTTGGTCTGAGTGGTAGTGGGAAGAGCACATTACTCAACCTTTTGCTTCGTCTCTATGAGCCTAGTAGTGGTCAGATATATATCGATGGATTCCCTCTTAAAGAGTTGGATATTCGTTGGCTGCGTCAGAACATTAGTTATGTTGCACAGGAATCCCATCTCTTTCATATGGACATCAAGTCAAACATAAAGTATGGTTGCCCCGGGAACATAAAACAAGAAGATATTGAACGGGCGGCGAAAAAGGCCTATGCCCATGATTTCATTTCTTCTCTTCCTAATGGATATGAAACCCTTGTTGATGACAATGCACTCAGTGGCGGACAAAAGCAGCGAATTGCCCTCGCCAGAGCCATTCTTAGGGACCCTGTTATAATGATACTTGATGAAGCAACCAGTGCTCTAGATTCTGAGAGTGAGCATTATATCCAGGAGTCGCTGTATGCGTTAAAAGATGAATCTAAAACAAGAACCATCATTATCATAGCTCATAGGCTTTCTACTGCAAAAGCTGCTGATAAGATCTTTGTTATGGATGATGGTGGCATCATTGAGATGGGAGATCATGAAGAGCTTATGCTCAAGGATGGGCTCTATGCAAAATTAAATAAAATTCAAGCAAATATTTTGACTTGA 696 0.4124 MMPVLEHLDFSIEENQVVAIVGLSGSGKSTLLNLLLRLYEPSSGQIYIDGFPLKELDIRWLRQNISYVAQESHLFHMDIKSNIKYGCPGNIKQEDIERAAKKAYAHDFISSLPNGYETLVDDNALSGGQKQRIALARAILRDPVIMILDEATSALDSESEHYIQESLYALKDESKTRTIIIIAHRLSTAKAADKIFVMDDGGIIEMGDHEELMLKDGLYAKLNKIQANILT 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01403 231 Pfam ABC transporter 5 153 IPR003439 GO:0005524
Vian2g01403 231 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 225 IPR003439 GO:0005524
Vian2g01403 231 PANTHER ABC TRANSPORTER B FAMILY 2 224 IPR039421 -
Vian2g01403 231 ProSitePatterns ABC transporters family signature. 125 139 IPR017871 GO:0005524|GO:0016887
Vian2g01403 231 Gene3D - 2 226 IPR027417 -
Vian2g01403 231 SMART AAA_5 14 202 IPR003593 GO:0016887
Vian2g01403 231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 226 IPR027417 -
Vian2g01403 231 FunFam Multidrug ABC transporter ATP-binding protein 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01403 Vian-Chr2 28874274 28881421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01403 4 226 Calmodulin-binding Proteins AT2G36910 51.101 1.11e-63 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01403 - - vum:124820309 451.44