Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01401 ATGGAGTCACCACCCAGTAATCACCACACCGTCGACGGCGATGCCAACGACGTTAGAGCCTTCTCCCACCGCGACGACGAAGACGACAAGCCCCAACCTCTCACCGGCGACGGTGCCAGTCCCGGAAAGATTTTTATTGGCGGTTTAGCGAGAGAAACCACTATTGCTCAATTCATCAAGCACTTTGGTAAATACGGTGAGATAACGGATTCCGTTATCATGAAGGACCGGAAGACCGGCCAGCCTCGCGGCTTCGGCTTCATAACTTACGCTGATCCCTCTGTGGTTGATAGAGTTATTGAGGACACTCACATTATCAACGGCAAGCAGGTGGAGATTAAGAGGACGATTCCGAGGGGTGCAGTTGGCTCGAACTCTAAGGACTTCCGAACCAAGAAGATTTTTGTTGGTGGAATTCCTTCTACTGTGAGTGAAGATGAATTTAGGGATTTCTTTACACGCTATGGAGAAGTCAAAGATCACCAGATAATGCGGGATCACTCTACTAATCGATCACGTGGCTTTGGGTTTATTACCTACGACTCTGAAGATGCTGTTGATGATCTCTTAGCTGTGGGGAACAAAATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCAGAACCAAAAAAGCCCAATCCACCAGCCCCATCATCCAAGCGATATAATGATGAGCGGTCTTCATATGGTGGTGGATATGGAGATGCTTATGATGGATTTGGTGGTAATTTTGGTATGGGTGACTATAGGTCAGGTGGTGCCTATGGTGGTAGGGGAAGTGCTTATGGTGGCTTTGGAAGTGAATTTGGTGGTTATGGAAGATATGCTGGTGCCATGGGGCCTTATAGAGGTGATCCTTCTCTTGGGTATGCTGGTAGATATGGTGGAGGCTTTGGCAGAGGCTATGATCTTGGTGGGTACGGTGGAGCTAATGAGGGTTATGGGGCATATGGTGGTGGTGGTTCCTCTGGTAATGCTTATGGAAGCAGCTATGATGCCAGCCTAGGGGGTGGATATGGAGGAGCTGGTGGAGGCTCCTTTTATGGGACTAGAGGGGGATATGGTGGTGCAGGAACTGCTCGATATCATCCTTATGGAAGATAG 1107 0.4887 MESPPSNHHTVDGDANDVRAFSHRDDEDDKPQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDRVIEDTHIINGKQVEIKRTIPRGAVGSNSKDFRTKKIFVGGIPSTVSEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITYDSEDAVDDLLAVGNKIEFAGAQVEIKKAEPKKPNPPAPSSKRYNDERSSYGGGYGDAYDGFGGNFGMGDYRSGGAYGGRGSAYGGFGSEFGGYGRYAGAMGPYRGDPSLGYAGRYGGGFGRGYDLGGYGGANEGYGAYGGGGSSGNAYGSSYDASLGGGYGGAGGGSFYGTRGGYGGAGTARYHPYGR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01401 368 SUPERFAMILY RNA-binding domain, RBD 38 121 IPR035979 GO:0003676
Vian2g01401 368 SMART rrm1_1 43 114 IPR000504 GO:0003723
Vian2g01401 368 SMART rrm1_1 133 206 IPR000504 GO:0003723
Vian2g01401 368 MobiDBLite consensus disorder prediction 1 42 - -
Vian2g01401 368 SUPERFAMILY RNA-binding domain, RBD 127 240 IPR035979 GO:0003676
Vian2g01401 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 202 IPR000504 GO:0003723
Vian2g01401 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Vian2g01401 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Vian2g01401 368 FunFam Heterogeneous nuclear ribonucleoprotein 1 124 245 - -
Vian2g01401 368 Gene3D - 123 240 IPR012677 -
Vian2g01401 368 MobiDBLite consensus disorder prediction 206 228 - -
Vian2g01401 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Vian2g01401 368 Gene3D - 42 121 IPR012677 -
Vian2g01401 368 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 26 368 - -
Vian2g01401 368 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 123 - -
Vian2g01401 368 MobiDBLite consensus disorder prediction 12 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01401 Vian-Chr2 28842832 28846434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01401 16 192 Eukaryotic Initiation Factors Gene Family AT1G71770 25.389 4.28e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01401 K12741 - gmx:100813165 502.286