Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01399 ATGGGTTCACCTGTTAATGGATTGGATTCTTTAGCAGAAGTTCAGAATTCAGTTTCTGTGGCACATCATGATCCTCCTTCAACATCAGGGATTCCCCGGCCATCTCGGCCGCCGTTAAGCACATCCAGAAATCATGGGGCTTCATCCAGTCAGCATAATAACTATGGAATGAAGACCATCCACCACCAAAAGCATTCATATCAGGAGGCTGACAGCGTAGAGCGAGATGAAATGCAGAATATGGAGAAGCAGCACTATAACACAAATGGGAAATCTGAGTATGTGAGCCTCAATAAAGCTGTTGAAAGTTGTTTAGGAAAGAATATCTCCAAAATGGAAACTAAATTAAGTATCAAGCAACCGTTAAATGCTTCCAAGAATTGTGATTCGTCAAAAGGTGTTGTTGATGGAACAAAGAGCAACTGCCAATCAGAGATTACCTTTTGTCCAAGTCCTCAGAATAGTTTCTATTCAGAAGCCAAGGAAAGTTTTGGCAACACTGGAGTCAGTGAATGTGTTAGTGTTGATAAGTCAGTTGAAAGTGGAGAAGTTACTAATTCCTGTGAATTTAACGAGAGCAGGAAGACCAGCATCTGTAGAGGAAGCACTGGAAGCGACGTTAGTGATGAGAGCAGCACTAGTAGTCTGAGCAGTGCTTTATACAAGCCCCACAAGGCAAATGACATAAGATGGGAAGCAATTCAAGCCATTCGAGCCCGTGATGGGGTGTTGGAAATGAGACATTTCAGGTTATTGAAGAAATTGGGATGTGGAGACATAGGAAGTGTATATCTAGCTGAACTAAGTGGCACTAGGACTTGTTTTGCAATGAAAGTAATGAACAAAACTGAGTTGGCAAGTCGCAAGAAGCTTGTTAGGTCTCAGACAGAGAGAGAGATACTGCAGTCTCTAGATCATCCATTTCTACCCACATTGTATACACACTTTGAGACAGAGACATTCTCCTGCTTGGTAATGGAGTTTTGCCCTGGTGGGGACTTGCATGCACTCAGGCAAAGACAACCTGGGAAGTATTTTTCTGAGATTGCTGCCAGGTTTTACGTGGCAGAAGTTCTCCTTGCGTTGGAGTACTTGCACATGCTTGGGGTGATCTACAGAGATCTGAAACCTGAGAATGTGTTGGTGAGAGAAGATGGACATATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGTGCTGTGAGTCCAACACTGGTGAAATCATCAAACTCTACCTTGGAGACAAAAAGCTCTGGATACTGCATTCAGCCTGCGTGCATTGAGCCAACTTGTGTAATTCAGCCAGACTGCATTCAACCATCATGTTTCACACCACGATTTCTCTCGGGAAAATCCAAGAAAGAAAAAAAGTTGAAGCCAAAGAATGATGTGCAGAATCAGGTGACCCCTCTTCCCGAGCTCATTGCCGAGCCCACCAATGCTAGATCAATGTCCTTTGTGGGAACACACGAGTACCTGGCACCTGAAATCATCAAAGGTGAAGGACACGGCAGTGCTGTAGACTGGTGGACATTTGGGATATTCTTGTATGAGATCTTGTTCGGAAGAACGCCGTTCAAAGGTCCGGCGAACCGTGCAACGCTGTTTAATGTTGTTGGACAGCCCTTAAAATTTCCAGAATCTCCCTCTGTGAGCTTTGCTGCCAGGGACTTGATCAGAGGTTTACTTGTGAAAGAACCTCAGAATCGCCTTGCTTACAGACGTGGAGCAACAGAAATAAAACAACATCCGTTTTTTCATAATGTTAACTGGGCACTGATCCGATGTGCAAATCCCCCAGAGGTTCCAAGACAAGCCATGAAAGCACTTGCAGCTGAAAAGCTGCCTGGAGTGAAGCCTTCTGGTAATTATTTAGATATTGATTTCTTTTGA 1893 0.4385 MGSPVNGLDSLAEVQNSVSVAHHDPPSTSGIPRPSRPPLSTSRNHGASSSQHNNYGMKTIHHQKHSYQEADSVERDEMQNMEKQHYNTNGKSEYVSLNKAVESCLGKNISKMETKLSIKQPLNASKNCDSSKGVVDGTKSNCQSEITFCPSPQNSFYSEAKESFGNTGVSECVSVDKSVESGEVTNSCEFNESRKTSICRGSTGSDVSDESSTSSLSSALYKPHKANDIRWEAIQAIRARDGVLEMRHFRLLKKLGCGDIGSVYLAELSGTRTCFAMKVMNKTELASRKKLVRSQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEIAARFYVAEVLLALEYLHMLGVIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNSTLETKSSGYCIQPACIEPTCVIQPDCIQPSCFTPRFLSGKSKKEKKLKPKNDVQNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYEILFGRTPFKGPANRATLFNVVGQPLKFPESPSVSFAARDLIRGLLVKEPQNRLAYRRGATEIKQHPFFHNVNWALIRCANPPEVPRQAMKALAAEKLPGVKPSGNYLDIDFF 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01399 630 Gene3D Transferase(Phosphotransferase) domain 1 480 604 - -
Vian2g01399 630 FunFam serine/threonine-protein kinase D6PK-like 333 400 - -
Vian2g01399 630 CDD STKc_phototropin_like 247 606 - -
Vian2g01399 630 PANTHER FLIPPASE KINASE 1-RELATED 71 608 - -
Vian2g01399 630 Gene3D Transferase(Phosphotransferase) domain 1 333 401 - -
Vian2g01399 630 FunFam Serine/threonine-protein kinase D6PK-like 247 332 - -
Vian2g01399 630 ProSiteProfiles Protein kinase domain profile. 249 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01399 630 Gene3D Phosphorylase Kinase; domain 1 247 332 - -
Vian2g01399 630 FunFam serine/threonine-protein kinase D6PK-like 481 604 - -
Vian2g01399 630 MobiDBLite consensus disorder prediction 1 54 - -
Vian2g01399 630 Pfam Protein kinase domain 250 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01399 630 Pfam Protein kinase domain 483 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01399 630 SMART serkin_6 249 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01399 630 SUPERFAMILY Protein kinase-like (PK-like) 226 605 IPR011009 -
Vian2g01399 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 370 382 IPR008271 GO:0004672|GO:0006468
Vian2g01399 630 MobiDBLite consensus disorder prediction 34 54 - -
Vian2g01399 630 MobiDBLite consensus disorder prediction 9 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01399 Vian-Chr2 28804446 28807104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01399 153 630 AGC Kinase Gene Family AT5G47750 70.161 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vian2g01399 Pkinase 6e-37 CL0016