Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01397 ATGAGGTTCGTAGAGGTAAATCCTAGATTAAATTCCAAAACTGCACTTAATTATGTGCTAATTCAATTTGTGTGTGTGCTTGGTGCAGCTCTGATAAGACTCAGAGGTGGGTTTCAGTACATGAACAATCCGGGTTTATGTGGGACTGGATTCGCTGATTTAGGTTCTTGCAAAGGAGTAAGCACTTCAGAACCGGTTAGACCCGAACCATATGAACCTGGTGATATTTCTACAAAAGATCTTCCTGCATCAATGGAACCACAGCGTGAAAGCTGCGGCGGTGGTCATTGTAAAAGGACATCGAAATCTTCAAAAATTGGTCTGGTTTTTACCGTCATTGGACTCGTTTTTGCTTCAACTGTTGCTGGGCTGCTTTTGCTATTCTGGCGACGTAGTCAGATTCAGAAAATTGGAAGTTCTGATAACCGGCTTAAGCAAGTGTGTAAGAAAAGTGCGTTTCCTCTTATCAGTTTGGAGTATTCTGACGGTTGGGACCCATTAGACAAAGGTCGATGTGGGTATTCCCAGGAATTTCTTGAGAGCTTTATGTTTAATCTTGAAGAAGTAGAACGCGCAACTCAAATCTTCTCAGAGGTAAATTTATTGGGGAAGAGTGATTCTTCAGCTGTGTACAGGGGGGTTTTGAGAGATGGTTCTGCTGTGACTATAAAATGCATCGCCAAAACAAGTTGCAAATCAGATGAAGGTGAGTTCTTGAAAGGTTTGAAGATATTGACCTCGTTAAGGCATGAAAATCTAGTTCGGTTGAGAGGGTTTTGCTGTTCAAAAGGCCGCGGGGAATGTTTTCTGATCTATGACTCTCTCTCTAATGGGAGTCTGTTGCAGTATCTTGATGTTAAGAGAAACAGTGGTAGGGTACTTGATTGGTCGACCAGAGTGTTCATCATTCGTGGTATTGCCAAAGGTATCGATTATCTGCATAGGAAAAAAGGAAGCAAACATGGGATCGTTCACCAAAATATATCAGCTGAAAACGTACTTCTGGATGCTGGGTACAAGGCTTTACTTGCAGATTCGGGATTGCACAAGCTCCTTGAAGATGATGTTGTTTTTTCCGCCCTCAAAGCTAGCGCTGCCATGGGATATCTGCCTCCAGAGTACACCAAAACTGGTCGTTTGACAGAAAAGAGTGATGTGTATGCCTTTGGAGTGATTGTTTTCCAGCTTCTCACCGGAAAACGTGACATAACCCAGTTAAATTGCCAAAGTGGCATTTTGAAAGATATAGTTGATGAGAATCTTGAAGGGATGTTCTCAGAATCAGAGGCCACCAAGCTGAGAAGAGTTGCTGTGCTTTGCACTCACGAGTCCCCACATCTTCGACCATCTATGGATACCCTAATGCTAGAACTGGATGATAATGTGTAG 1389 0.4276 MRFVEVNPRLNSKTALNYVLIQFVCVLGAALIRLRGGFQYMNNPGLCGTGFADLGSCKGVSTSEPVRPEPYEPGDISTKDLPASMEPQRESCGGGHCKRTSKSSKIGLVFTVIGLVFASTVAGLLLLFWRRSQIQKIGSSDNRLKQVCKKSAFPLISLEYSDGWDPLDKGRCGYSQEFLESFMFNLEEVERATQIFSEVNLLGKSDSSAVYRGVLRDGSAVTIKCIAKTSCKSDEGEFLKGLKILTSLRHENLVRLRGFCCSKGRGECFLIYDSLSNGSLLQYLDVKRNSGRVLDWSTRVFIIRGIAKGIDYLHRKKGSKHGIVHQNISAENVLLDAGYKALLADSGLHKLLEDDVVFSALKASAAMGYLPPEYTKTGRLTEKSDVYAFGVIVFQLLTGKRDITQLNCQSGILKDIVDENLEGMFSESEATKLRRVAVLCTHESPHLRPSMDTLMLELDDNV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01397 462 MobiDBLite consensus disorder prediction 63 100 - -
Vian2g01397 462 CDD STKc_IRAK 202 459 - -
Vian2g01397 462 Gene3D Transferase(Phosphotransferase) domain 1 275 461 - -
Vian2g01397 462 ProSiteProfiles Protein kinase domain profile. 196 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01397 462 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 104 460 - -
Vian2g01397 462 FunFam Protein NSP-INTERACTING KINASE 2 168 274 - -
Vian2g01397 462 Pfam Protein tyrosine and serine/threonine kinase 200 457 IPR001245 GO:0004672|GO:0006468
Vian2g01397 462 SUPERFAMILY Protein kinase-like (PK-like) 177 455 IPR011009 -
Vian2g01397 462 Gene3D Phosphorylase Kinase; domain 1 174 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01397 Vian-Chr2 28766534 28768013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01397 8 309 Miscellaneous Gene Families AT4G22730 44.410 1.94e-74 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vian2g01397 PK_Tyr_Ser-Thr 2.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01397 - - var:108327466 866.3