Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01385 ATGGACAAGCACAAGTGCAAGCTTTGCTTCAGGAGCTTCTCCAATGGCAGAGCCTTGGGGGGTCACATGCGCTCTCACATGATGAACCTTCCTCTCTCAAAGCCCGAAGAAGCGTCCCCGCGAACCATCCAACTCAGCTTCGAAGCCGAATCAGCTTCTTCCTCGTCTTCCTCATCCGATGATGACGAAGACGGTGACAAGTGTCTCTGTTATGGCCTCAGAGAGAACCCCAAACGAAGCATTCGCCTCGTGGATCCCGAATTCTCGTTCGCAGCTGCAGACACTGGCTCCGCGATCCTCCATGACAGAGAGAGCGAGTCCGAGTCATCCAAGAGCAACCCAACTCGTAAAAGATCCAAAAGGCCATGGAATAACAATAATAATAATATTAATAGCAGAAATTATTATTATTATAATGATCATAATAATGATACTAACAACTATACCACCCCCAGCATCAAGAAGCAAGTTTTCGGAACCGAACATGAAGCCCTGATGAAGAAGAAGAGTAAGACAGAATCGTGGGTGGATCACGAACCTGCGAGCTCGGTCTCCGAAGCAACTACCGAGGAAGACGTGGCGTTCTGTCTGATGCTGCTTTCCAGGGACAAATGGAAGCGACATAAGGACCAACCGCAATTCATGGATGTGGAAGATCAATACGAGGAGGAGGAAGAGGAAGAGGAGGAAGAAGAGGAGGAAGACGAAGCATTCGAGGAGAGCGAGGAATCGCAAGAGACGATGAAACTTTGCAAGAACCGAGTACGAGGAAGGTACAAATGTGACACGTGCAACAAGGTGTTTCGATCGTACCAAGCTTTGGGGGGCCACCGAGCGAGTCACAAGAAGATCAAAGTGAACGTGAAAGTGGACGGTGAAGAAGCGGAAGTTGAGCACAGGAAGAAAAGTGGGACGTGTGGCGTGGAGAAGAAAATCCACGAGTGCCCCGTTTGTTTCAGAGTCTTCGCTTCGGGTCAAGCACTTGGAGGACACAAGAGAACCCATGTTACTGGGTCAGCACCCTCAACAGTTCCATCAACTTCAGCAAAGTTTGGAAACAGCTTCATAGATCTCAACCTGCCGGCTCCGATTGACGAAGACGAGGCTAGCCAAATCGAGAACTCTGCTGTTTCCGATGCGGAATTCGTCAAAACCCGATAG 1161 0.4935 MDKHKCKLCFRSFSNGRALGGHMRSHMMNLPLSKPEEASPRTIQLSFEAESASSSSSSSDDDEDGDKCLCYGLRENPKRSIRLVDPEFSFAAADTGSAILHDRESESESSKSNPTRKRSKRPWNNNNNNINSRNYYYYNDHNNDTNNYTTPSIKKQVFGTEHEALMKKKSKTESWVDHEPASSVSEATTEEDVAFCLMLLSRDKWKRHKDQPQFMDVEDQYEEEEEEEEEEEEEDEAFEESEESQETMKLCKNRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVNVKVDGEEAEVEHRKKSGTCGVEKKIHECPVCFRVFASGQALGGHKRTHVTGSAPSTVPSTSAKFGNSFIDLNLPAPIDEDEASQIENSAVSDAEFVKTR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01385 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 286 IPR013087 -
Vian2g01385 386 Pfam C2H2-type zinc finger 4 27 - -
Vian2g01385 386 Pfam C2H2-type zinc finger 313 335 - -
Vian2g01385 386 Pfam C2H2-type zinc finger 258 283 - -
Vian2g01385 386 MobiDBLite consensus disorder prediction 367 386 - -
Vian2g01385 386 SUPERFAMILY beta-beta-alpha zinc fingers 258 335 IPR036236 -
Vian2g01385 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 313 340 IPR013087 -
Vian2g01385 386 ProSitePatterns Zinc finger C2H2 type domain signature. 315 335 IPR013087 -
Vian2g01385 386 MobiDBLite consensus disorder prediction 99 115 - -
Vian2g01385 386 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Vian2g01385 386 Gene3D Classic Zinc Finger 256 335 - -
Vian2g01385 386 MobiDBLite consensus disorder prediction 99 130 - -
Vian2g01385 386 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Vian2g01385 386 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 385 IPR044303 GO:0006355
Vian2g01385 386 MobiDBLite consensus disorder prediction 211 249 - -
Vian2g01385 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Vian2g01385 386 MobiDBLite consensus disorder prediction 371 386 - -
Vian2g01385 386 Coils Coil 214 247 - -
Vian2g01385 386 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Vian2g01385 386 SMART c2h2final6 313 335 IPR013087 -
Vian2g01385 386 SMART c2h2final6 259 281 IPR013087 -
Vian2g01385 386 SMART c2h2final6 4 26 IPR013087 -
Vian2g01385 386 MobiDBLite consensus disorder prediction 217 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01385 Vian-Chr2 28494049 28495209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01385 1 372 C2H2 Transcription Factor Family AT3G60580 40.741 2.55e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g01385 zf-C2H2_6 3e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01385 - - vra:106780254 676.396