Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01370 ATGGATCTCGCCCTAAGCAAGCAAGTGCTAGCCATCATAGGTACAATAACACACAATGAAGCAACTCTCGCAAGTGAATTTAATGACAAAGTAAAAAATATTCCTATCTTGTCTCTAATTTCATCTGTAACCAGAGCAGAGCAAGTATCACCTCTATTGCCTCACTTCAACCAAGTGGGATATAATATTAACCTTCAAATGCAATGCATTGCAGCCATTGTAGGAGAATTTAAATGGACAAAGGTGACAGCAATCTATGAACTTGATAACAGGTTTTCCTCTGATCCTGGGATCCTACTCAACCTCTCCTATTCTCTTAGACTTGTTGGTTCTGAGATTGACAATCATGTAGCTTTGCCTCCATTGTCCTCTCTATTAAACCCAAATTCTAACATTGAAAATGAGCTTAATAGGCTAAAAAGCAGGAGTAACAGGGTCTTCTTGATTGTGCAATCTTCTTTAGAGCTCGCTAACCTACTTTTTGAGAAAGCAAAGCAAATGGGTTTAATGGGAAAGGGTTCTGTGTGGATTATCCCAGATGGGATTGCTGATCATCTTGATTCAGTTAACCCGTCTGCTATCTCTAACATGCAAGGAGTTATTGGATTTAAGACACCCTTCTTGGAAACAAGCAAGGCATTTAGACGGTTCAAGTTAAAATTTCGTAGAAGGTTTGTCTTCGAGTTCCCGGAAGAAGAGAACATTAACCCAAGTTCCTTTGCACTTCAATCGTATAATGCAACCTGGGAAGTTGCTCAAGCTGCAAAGGAATCACAAGGGAAGTTAACCCTTGAACAATTATTAAAAAGTAAAATCTCCATGAATGAAAAATTACGGCAATCACCAACCCTCAGCATAATTAACGTGGTAGGAAAAAGTTACAGAGAGTTGGCATCATGGTCTCCCGCATCAGGTTTCTCCAAAACCCTTGTTACAGAACAGATGACAGAGATGAACACAAACAGTGCTTCAAGTGGAGTTTTGAGCACAGTTTATTGGCCAGGAGGCATACAATTTGTTCCTAAGGGATGGACTCACAACACCAAAGAGAGGACATTACAAATAGGAGTTCCTGCAAATGCTGCATTTACTGATTTCGTGAATGTGGAATATGATATTAAGAGGAACAAAACTTCTTTTACCGGATTCTCAATTGATGTCTTTAAAGCAGCTGTTCAAACTTTGCCTTATAATTTGAATTTCTCGTTTGTTCCCTTCGATGGATCTTATGATGAAATGGTAGGCCAAGTCTACAATAAGGTATGGTAA 1269 0.3916 MDLALSKQVLAIIGTITHNEATLASEFNDKVKNIPILSLISSVTRAEQVSPLLPHFNQVGYNINLQMQCIAAIVGEFKWTKVTAIYELDNRFSSDPGILLNLSYSLRLVGSEIDNHVALPPLSSLLNPNSNIENELNRLKSRSNRVFLIVQSSLELANLLFEKAKQMGLMGKGSVWIIPDGIADHLDSVNPSAISNMQGVIGFKTPFLETSKAFRRFKLKFRRRFVFEFPEEENINPSSFALQSYNATWEVAQAAKESQGKLTLEQLLKSKISMNEKLRQSPTLSIINVVGKSYRELASWSPASGFSKTLVTEQMTEMNTNSASSGVLSTVYWPGGIQFVPKGWTHNTKERTLQIGVPANAAFTDFVNVEYDIKRNKTSFTGFSIDVFKAAVQTLPYNLNFSFVPFDGSYDEMVGQVYNKVW 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01370 422 Gene3D - 345 422 - -
Vian2g01370 422 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 8 420 IPR015683 -
Vian2g01370 422 SUPERFAMILY Periplasmic binding protein-like II 328 420 - -
Vian2g01370 422 Pfam Receptor family ligand binding region 4 270 IPR001828 -
Vian2g01370 422 SUPERFAMILY Periplasmic binding protein-like I 1 344 IPR028082 -
Vian2g01370 422 Gene3D - 62 239 - -
Vian2g01370 422 FunFam Glutamate receptor 66 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01370 Vian-Chr2 28182640 28183908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01370 1 418 Ion Channels AT2G24720 31.590 4.81e-54 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01370 - - var:108327103 800.045