Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01355 ATGGAGAACAAAAGAATGGCAGTTAACGGAGAACAGAAACGCAGCCCCAGAAGCCAAAAGATCCCATTAACAGATTCCAATGTCCAAAACATGGCGACCCTTTTATCCCCAAGGTTCAAATCTGCAGCTGCTATGGCTGGTTGGGATGAAGAGGCACTGTTATTGGCCAGCCTCATCGTTGAAGACACGCCAGTTAGAGATTCCAAGCACAAGAAACGCTCTCTTTTGAATTCCAGTTCTCCATCCACCAACTCATCAAGGATACGTAGAACTTGGAGGACTTCACGACAACCAATCCCTGTAATTCTTGATCTTGATGCAGAAGAAACTCCCAAAAAGGAAAGTGGGAGAAAGAAGAAGGAAGAAAGGGCTGGTGTTAATAACGAGGGAAGAAAAGGAGGAGGAGGGGATGGGAATGAATCGAAAGAGAAGAACCCGGGTGCCCCTTCTTCTAGTTCTGCTTTACCCTGCATTGATAAACTTAGGGACGAACTTTCCTGTGCTATTTGTTTGGAAATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAGAAAATGTCTACGATCTGCTGCAGATAAGTGTGGCAAAAAGTGCCCCAAATGCAGGCAATTAATAAGCAATGGACGATCATGCACGGTAAACACAGTCCTCTGGAACACAATCCAGCTCCTGTTTCCCCAAGAAATTGAGGCAAGAGAAGCAGCCCGCTCCTTGAATAGTCGCCAACAAGCTCAAAATCTGAGTCCTCAAACAGCATTTTATGCTAACCTAAGGAATACAAGCATACAAGCTTCTGGTGGGGCATCAAGCAGAAACAATTCAAGGAAGAGTGTGGCAGTGACATCAACAACACAGGAGGATGAGGATGCTGCATTGGCTAGAAGGTTACAGAGAGAAATTGTTGAACAAAGCCCGGGAACAACTCGAATGAGAACAAGAAGAGGGGTTCCTACTAGCCAAGATCAGGATGCAGCTTTGGCTCTAAGGTTGCAGAGAGAAGAGTTCATCCAAACCTTTAGGGGGAGCAGCCAGGAACAGACTATTAGGCTACCTTCACCGTCTTTTGCAAGAGCAAATTTGAGGGCTATGGCCTCAAGAGCCATGAATCCTAGGACTCGTGACAGAAGAAGATAA 1146 0.459 MENKRMAVNGEQKRSPRSQKIPLTDSNVQNMATLLSPRFKSAAAMAGWDEEALLLASLIVEDTPVRDSKHKKRSLLNSSSPSTNSSRIRRTWRTSRQPIPVILDLDAEETPKKESGRKKKEERAGVNNEGRKGGGGDGNESKEKNPGAPSSSSALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEAREAARSLNSRQQAQNLSPQTAFYANLRNTSIQASGGASSRNNSRKSVAVTSTTQEDEDAALARRLQREIVEQSPGTTRMRTRRGVPTSQDQDAALALRLQREEFIQTFRGSSQEQTIRLPSPSFARANLRAMASRAMNPRTRDRRR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01355 381 SUPERFAMILY RING/U-box 159 230 - -
Vian2g01355 381 Pfam Zinc finger, C3HC4 type (RING finger) 167 205 IPR018957 GO:0046872
Vian2g01355 381 SMART ring_2 167 205 IPR001841 -
Vian2g01355 381 MobiDBLite consensus disorder prediction 106 128 - -
Vian2g01355 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 236 IPR013083 -
Vian2g01355 381 MobiDBLite consensus disorder prediction 268 291 - -
Vian2g01355 381 ProSiteProfiles Zinc finger RING-type profile. 167 206 IPR001841 -
Vian2g01355 381 MobiDBLite consensus disorder prediction 268 324 - -
Vian2g01355 381 MobiDBLite consensus disorder prediction 65 153 - -
Vian2g01355 381 MobiDBLite consensus disorder prediction 75 93 - -
Vian2g01355 381 PANTHER UNCHARACTERIZED 323 373 - -
Vian2g01355 381 MobiDBLite consensus disorder prediction 1 25 - -
Vian2g01355 381 ProSitePatterns Zinc finger RING-type signature. 182 191 IPR017907 -
Vian2g01355 381 MobiDBLite consensus disorder prediction 305 323 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01355 148 221 RAD5 or RAD16-like Gene Family AT5G43530 37.500 6.18e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01355 - - gmx:102666585 510.375