Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01351 ATGGTTTCGCTGAAACTGCAGAAGCGCCTCGCTGCAAGTGTTCTCAAGTGCGGCAGAGGGAAGGTTTGGCTTGACCCCAATGAAGTCAACGAAATCTCCATGGCCAATTCTCGCCAAAACATAAGGAAGCTGGTTAAGGATGGATTTATTATCAGGAAGCCCACCAAGATTCACTCTCGCTCACGTGCCCGTCGAATGAAGGAAGCTAAGAGAAAAGGACGTCACTCTGGATATGTTCTTAATGTCCCAAACTTTGTTGGTATCTATGACATATCGTGGAATTGCTGTGATATCATGAAATATTTTACTGGGTTGTTTCCCATTTTGACAAATAATGTTGGGAGTCCTCTAATGGTGCACCGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCCACTAAAATCCTTTGGATGAGGAGAATGCGTGTGCTCAGACGCTTGCTTCGCAAGTACAGGGAGTCGAAGAAGATTGACAAGCATATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAACAAGAGGGTTTTGATGGAAAGCATACACAAGTCGAAAGCAGAGAAGGCAAGAGAGAAGACTTTGTCTGATCAGTTTGAGGCGAAACGCGCCAAGAACAAGGCCAGCAGAGAAAGGAAAATTGCCCGGAGGGAGGAGCGATTGGCCCAAGGTCCAGGCGAAAAGTCTGCAGCTACAGCGCCGCAGCCTGCCCAAGCACAAAAGAAATCCAAGAAGTGA 744 0.4691 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYVLNVPNFVGIYDISWNCCDIMKYFTGLFPILTNNVGSPLMVHRKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKSAATAPQPAQAQKKSKK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01351 247 SUPERFAMILY Ribosomal protein L19 (L19e) 3 78 IPR035970 GO:0003735|GO:0005840|GO:0006412
Vian2g01351 247 Pfam Ribosomal protein L19e 4 78 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vian2g01351 247 Pfam Ribosomal protein L19e 122 187 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vian2g01351 247 SMART Ribosomal_L19e_2 3 188 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vian2g01351 247 SUPERFAMILY Ribosomal protein L19 (L19e) 118 186 IPR035970 GO:0003735|GO:0005840|GO:0006412
Vian2g01351 247 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Vian2g01351 247 CDD Ribosomal_L19e_E 4 209 IPR033935 GO:0003735|GO:0022625
Vian2g01351 247 MobiDBLite consensus disorder prediction 186 247 - -
Vian2g01351 247 FunFam Ribosomal protein L19 1 56 - -
Vian2g01351 247 Gene3D - 117 236 - -
Vian2g01351 247 PANTHER 60S RIBOSOMAL PROTEIN L19 120 230 IPR039547 GO:0003723|GO:0003735|GO:0022625
Vian2g01351 247 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Vian2g01351 247 FunFam Ribosomal protein L19 113 237 - -
Vian2g01351 247 MobiDBLite consensus disorder prediction 186 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01351 Vian-Chr2 27841897 27843764 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01351 1 247 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 71.315 9.15e-116 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01351 K02885 - gmx:100499875 335.495