LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian2g01343	ATGAGAAGATGTGATACGATTGTTGATGAAGATATGAGTTGCAGAGCAAGAGATCATGAACATGAGAAGGAGATCTCGAGCATGAGAGTCGAATGTCCAATGATAAAAACGAGGCAGACTTTTATGGATTTTCTGGTGGTGGATTCGGACAAGGCAAATGAAACTGAGCGTTGCTGTCTAGAAGAGAGTACAAGTATATTTAAAGGAGTTGAAATCCAAGAGCCTTATGTGGGCATGGAATTTGATTCCGAAGTAGCTGCTAGAAAATTTTATGTTGATTATGCCAGACGGGTTGGATTTGTTGTACGCATAATGCAAAGGCGACGTTCTGGAATTGATGGGAGGACTCTTGCTCGCCGGCTTGGATGTAACAAACAAGGATTCTCACCAAATACCAAGGGGGCATTCGGACCAGAGAAAAAGCCAAGACCTAGTGCCCGTGAAGGTTGCAAGGCCACTATCTTGGTAAAGTTAGAAAAATCTGGAAAATGGGTTGTCACCAGATTTATAAAGGACCACAACCATCCTCTAATTGCTACTGCTAATGGATTCGGCACAGTGGGTGATAAAGATAAGAAAATTTCAGAACTTACAATGGAGGTGGAACACCAAGATCAACTTTGTCTTGCATATCGAGAAAAACTGCTCAGCTTCATAAAAAATGTTGAGGAGGAGACACGTGAACTATCCACAAAAGTTCAACTCGTTGTTGAAAATGTAAGGAGAGCTGAATCAGAATTGAAAAAATGTTCACAGAACGTAAAGCCTTGGTGCTTAACCTGA	783	0.4138	MRRCDTIVDEDMSCRARDHEHEKEISSMRVECPMIKTRQTFMDFLVVDSDKANETERCCLEESTSIFKGVEIQEPYVGMEFDSEVAARKFYVDYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNTKGAFGPEKKPRPSAREGCKATILVKLEKSGKWVVTRFIKDHNHPLIATANGFGTVGDKDKKISELTMEVEHQDQLCLAYREKLLSFIKNVEEETRELSTKVQLVVENVRRAESELKKCSQNVKPWCLT	260

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian2g01343	260	Coils	Coil	219	253	-	-
	Vian2g01343	260	PANTHER	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	19	241	-	-
	Vian2g01343	260	Pfam	FAR1 DNA-binding domain	89	178	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian2g01343	Vian-Chr2	27718551	27723714	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Vian2g01343		FAR1	2.1e-28	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian2g01343	-		-	var:108329488	528.094