Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01342 ATGGTTAAGAATCAGAAAAGTGTAGTAGCTATGGTTAGCCAGGAGAGAAAGAAGAAGATGAAAAACGACTCCTATGGGTTTGGGTCCATTTTCATGCATGCCGATGGTAAAGATTTGTTTTTAATGATTTTAGGTACACTTGGGGCTGTTGGGGAAGGCTTTGCCACCCCTCTAGTGTTGTTTATCAGTAGTCGCATGATGAATAACATTGGGAGTTCATCCAACATGCAAGGGAACACCTTCATCCATAACATCGACAAGAATGCAGTGGCGTGGTTATATTTAGCTGTTTGCTCTTTTGCCGTTTGCTTCCTCGAGGGTTACTGTTGGACGAGAACAAGCGAAAGACAGGCAGCGAGAATGAGATTCAGGTATCTGAAAGCAGTGCTTCGACAAGATATCGCGTACTTCGATATGCATGTCACAAGCACGTCAGAGATCATTACCAGCGTCTCCAACGACAGCCTCGTAATTCAAGATGTTCTCAGTGAAAAAGTTCCGAACTTCTTGATGAACATTTCGTTGTTCGTTGGGAGCTACATAGCGGCGTTTGCAATGTTGTGGAGGCTGGCCATTGTGGGATTTCCTTTCGTGGTTCTTCTGGTGATCCCGGGTTTAATTTACGGCAAGACCTTGTTGGGGTTGTCTAGTAAAATCAGAGATGAGTATAATGAAGCAGGAACAGTTGTGGAACAAGCAATTTCATCAATCAGAACAGTTTATTCCTTCGTTGGGGAAAGCCAGACCTTGAACACTTTCTCAAACGCGCTTCAAGGGACGGTGAAGTTGGGCCTGAAGCAAGGCTGGGCAAAAGGCTTAGCCATTGGTAGCAACGGCGTCGTTTTCGCCATTTGGTCTTTCATGTCCTATTACGGCAGCAGACTCGTTATTTATCATGGCGTCAAAGGAGGGACAGTTTTCGCCGTTGGAGCAGCAATCGCTGTTGGTGGATTGGGACTGGGAGCGGCTTTAGCGAATGTGAAGTTCTTTTCGGAGGCGGGTGCGGCGGCGGAGCGTATAAAGCAGGTGATAAAGAGGGTTCCGAGGATTGATTCTGAGAGCGAGGAAGGGGAGATTCTGGAGAGAGTTAACGGGGAAGTTGAATTTGACAGGGTGGAATTTGTGTACCCGTCGAGACTAGAGAGTCCAGTATTGAACGGGTTGAGTGTGAGAATTCCGGCAGGGAAGAGAGTGGCGTTGGTTGGGGAGAGTGGGTCGGGGAAGTCGACGGTGATAGCGCTTTTGCAGAGGTTCTATGACCCAATGGGAGGAGAGGTGCGTTTGGATGGGGTAGGGATTCAGAAGTTGCAGGTGAAGTGGTTGCGTTCGCAGATGGGGTTGGTGAGCCAGGAGCCTGCTCTGTTCGCCACAACCATTAAAGAGAACATACTTTTCGGCAGAGAGGATGCCACGGAGGACCAAGTTATTGAGGCTGCAAAAGCTGCGCATGCTCATGATTTCATCTCGCTTCTGCCTCACGGTTACCAAACACAGGTGGGAGAGAGGGGAATTCAGATGTCAGGGGGACAGAAACAGAGGATAGCGATTGCGAGGGCAATAATCAAGAAACCGCGAATTCTACTTCTGGACGAAGCAACAAGCGCGCTAGACACAGAATCCGAGCATCTCGTCCAACAGGCACTGGACAACGCCGCCGCGGGTTGCACCGCTATCATCATCGCCCACCGTTTATCCACTATCCAGAACGCAGACCTCATCGTCGTCGTCGCGGGCGGAAAGGTAATAGAGATGGGCTCGCACGACGAGCTCCTCGAAAACGACACCAGCGCCTACGCCTCCTCTTTCCGCCTCCAGCAACAAACGGAGAAAGAGAAAGTAGCCGAAAGCGAGGAAAACGTTGCTCCAAGGAGTGTCACGAGCACGTCATCCACGACAGACATGGAAAACGCGCTCCCGGTGGGGCCAGTTGGTGGGAGTGGTACGGACGTGGCGGAAGGGAAGAAGGTACCAGCGCCGTCGTTTCACAGATTGGTATCCCTGAGTCTCCCCGAGTGGAAACACGTGCTTGTGGGGTGCTTAAACGCGATGGTGTTCGGTGCCGTTCAGCCAGTTTACGCATTCACTATGGGGTCCACGATACTGTTGTATTTTCACGCGGATCATGAGGAGATAGCGAGGAAGACTAGGATCTACTCGTTCGCCTTTCTGGGCCTGTTTGTGGTGTCTTTCATTGCAAATGTTGGGCAGCATTATTGTTTCGCTTACATGGGGGAATACTTGACCAAAAGGGTCAGAGAGACCGTGCTTTCGAAAATCCTCACTTTCGAAATTGGATGGTTTGATTTGGACGAAAACTCCAGTGGCGCCATCTGTTCCAGGCTTGCCAAAGACGCCAATGTGCATGAAAGAGAGGATTACGAGGCTTTGAAGGTGGTATTGTGGCTCCTGTCACAACAGAGGAAAGTTATGTACTGGGTAAGGTCTCTAGTGGGAGATAGAATGGCATTGCTGGTACAGACATTTTCAGCGGTGATAACAGCTTACACAATGGGTCTGATAATTTCCTGGAAGCTTTCCATTGTTATGATAGCGGTACAACCTATCATCATAGGTTGCTTTTACACAAGGCGTGTCCTTCTCAAGAGCATGTCCAACATGTCCCTGAAGGCCCAGCAACAAAGCAGCAAACTGGCATCAGAAGCCGTTTCCAATCTCCGAACCGTCACAGCCTTTTCTTCGCAGGACCGGATTCTCAAAATGCTTGAAGCGGCCCAAGAGGGTCCAAGCAGAGAGAACATTCGGCAGTCGTGGTTTGCTGGCATGGGACTTGGATTCTCCCAAGGCCTTGCATCTTGCGTTTGGGCCCTAGATTTTTGGTACGGTGGCAAGCTCATCTCGAACGGGCACATAACAACAAAAGCGTTCTTTGAGAGCTTCATGGTTTTGGTGAGCACTGGGAGGATAATTGCGGATGCGGGAAGCATGACAACGGATCTTGCTAGAGGTGCTGATGTTGTGGCCTCTACTTTTGGCATCATAGATAGGAGTACGAAAATAGAGCCTGATGACCAAAACGGGTACAAGGCAGAAAAGTTGGTTGGTGAAATAGAGTTTCATGAGGTTCATTTTTCGTACCCTACAAGGCCTGATGTGGCTATCTTCCAGGGGTTCTCGATGAAAATGGAGGCAGGGAAATCAACCGCGTTGGTGGGGCAAAGTGGATCTGGAAAATCAACGATCATAGGGCTAATAGAGAGATTTTACGATCCACTTAGAGGGATGGTGACAATAGATGGAATGGACATAAGATGGTATAACCTAAAGTCACTAAGGAAGCACATAGCACTTGTGAGCCAGGAGCCAACGTTGTTTGGTGGGACCATAAGAGAGAACATTATATATGGAAGAGGTGGGAGGGTTGATGAGAGTGAGATGATAGAGGCAGCACGAGCAGCAAACGCTCATGATTTCATAGCGGGTCTGAAGGAGGGGTACGAGACATGGTGTGGGGAAAAAGGGGTACAACTTTCAGGGGGTCAAAAGCAAAGGATAGCAATAGCGAGGGCCATATTGAAAAACCCTAAGGTGTTGCTGTTGGACGAGGCCACAAGTGCATTGGATGGTCAATCAGAGAAGGTGGTGCAAGATACGTTGATGAGGGTAATGATAGGGAGGACCAGCGTGGTGGTGGCACACAGGTTGAGCACCATTCACCATTGTGATACTATTGCTGTGATGGAAAAGGGGAGGGTGGTGGAGACTGGAACCCACTCCTCCTTGTTGGCCAAAGGACCATGTGGAGCTTATTACTCTTTGGTGAGCCTTCAGACTAGACATGCAGCCACACTCAACAACACTTGTACTAAAGCTACCCACTCTGTCACTTGA 3849 0.4929 MVKNQKSVVAMVSQERKKKMKNDSYGFGSIFMHADGKDLFLMILGTLGAVGEGFATPLVLFISSRMMNNIGSSSNMQGNTFIHNIDKNAVAWLYLAVCSFAVCFLEGYCWTRTSERQAARMRFRYLKAVLRQDIAYFDMHVTSTSEIITSVSNDSLVIQDVLSEKVPNFLMNISLFVGSYIAAFAMLWRLAIVGFPFVVLLVIPGLIYGKTLLGLSSKIRDEYNEAGTVVEQAISSIRTVYSFVGESQTLNTFSNALQGTVKLGLKQGWAKGLAIGSNGVVFAIWSFMSYYGSRLVIYHGVKGGTVFAVGAAIAVGGLGLGAALANVKFFSEAGAAAERIKQVIKRVPRIDSESEEGEILERVNGEVEFDRVEFVYPSRLESPVLNGLSVRIPAGKRVALVGESGSGKSTVIALLQRFYDPMGGEVRLDGVGIQKLQVKWLRSQMGLVSQEPALFATTIKENILFGREDATEDQVIEAAKAAHAHDFISLLPHGYQTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDTESEHLVQQALDNAAAGCTAIIIAHRLSTIQNADLIVVVAGGKVIEMGSHDELLENDTSAYASSFRLQQQTEKEKVAESEENVAPRSVTSTSSTTDMENALPVGPVGGSGTDVAEGKKVPAPSFHRLVSLSLPEWKHVLVGCLNAMVFGAVQPVYAFTMGSTILLYFHADHEEIARKTRIYSFAFLGLFVVSFIANVGQHYCFAYMGEYLTKRVRETVLSKILTFEIGWFDLDENSSGAICSRLAKDANVHEREDYEALKVVLWLLSQQRKVMYWVRSLVGDRMALLVQTFSAVITAYTMGLIISWKLSIVMIAVQPIIIGCFYTRRVLLKSMSNMSLKAQQQSSKLASEAVSNLRTVTAFSSQDRILKMLEAAQEGPSRENIRQSWFAGMGLGFSQGLASCVWALDFWYGGKLISNGHITTKAFFESFMVLVSTGRIIADAGSMTTDLARGADVVASTFGIIDRSTKIEPDDQNGYKAEKLVGEIEFHEVHFSYPTRPDVAIFQGFSMKMEAGKSTALVGQSGSGKSTIIGLIERFYDPLRGMVTIDGMDIRWYNLKSLRKHIALVSQEPTLFGGTIRENIIYGRGGRVDESEMIEAARAANAHDFIAGLKEGYETWCGEKGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDGQSEKVVQDTLMRVMIGRTSVVVAHRLSTIHHCDTIAVMEKGRVVETGTHSSLLAKGPCGAYYSLVSLQTRHAATLNNTCTKATHSVT 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01342 1282 MobiDBLite consensus disorder prediction 620 636 - -
Vian2g01342 1282 Gene3D ABC transporter type 1, transmembrane domain 813 1020 IPR036640 GO:0005524|GO:0016020
Vian2g01342 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 605 IPR027417 -
Vian2g01342 1282 FunFam ABC transporter B family member 4 1013 1270 - -
Vian2g01342 1282 CDD ABC_MTABC3_MDL1_MDL2 367 605 - -
Vian2g01342 1282 MobiDBLite consensus disorder prediction 608 643 - -
Vian2g01342 1282 SMART AAA_5 394 588 IPR003593 GO:0016887
Vian2g01342 1282 SMART AAA_5 1050 1237 IPR003593 GO:0016887
Vian2g01342 1282 CDD ABC_MTABC3_MDL1_MDL2 1023 1263 - -
Vian2g01342 1282 Pfam ABC transporter 385 534 IPR003439 GO:0005524
Vian2g01342 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1023 1260 IPR003439 GO:0005524
Vian2g01342 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 367 603 IPR003439 GO:0005524
Vian2g01342 1282 Gene3D - 1021 1268 IPR027417 -
Vian2g01342 1282 Gene3D - 365 619 IPR027417 -
Vian2g01342 1282 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 1006 - -
Vian2g01342 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1013 1263 IPR027417 -
Vian2g01342 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 682 988 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g01342 1282 Pfam ABC transporter transmembrane region 676 786 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g01342 1282 Pfam ABC transporter transmembrane region 813 971 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g01342 1282 Pfam ABC transporter transmembrane region 42 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g01342 1282 Gene3D ABC transporter type 1, transmembrane domain 91 786 IPR036640 GO:0005524|GO:0016020
Vian2g01342 1282 SUPERFAMILY ABC transporter transmembrane region 36 351 IPR036640 GO:0005524|GO:0016020
Vian2g01342 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 332 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian2g01342 1282 SUPERFAMILY ABC transporter transmembrane region 662 1175 IPR036640 GO:0005524|GO:0016020
Vian2g01342 1282 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 340 - -
Vian2g01342 1282 ProSitePatterns ABC transporters family signature. 1163 1177 IPR017871 GO:0005524|GO:0016887
Vian2g01342 1282 ProSitePatterns ABC transporters family signature. 506 520 IPR017871 GO:0005524|GO:0016887
Vian2g01342 1282 Pfam ABC transporter 1042 1191 IPR003439 GO:0005524
Vian2g01342 1282 PANTHER ABC TRANSPORTER B FAMILY 11 734 IPR039421 -
Vian2g01342 1282 FunFam ABC transporter B family member 4 357 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01342 Vian-Chr2 27688412 27695499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01342 47 613 Calmodulin-binding Proteins AT2G36910 36.979 9.71e-100 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01342 K05658 - gmx:100791575 2009.57