Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01330 ATGTATCAGGCTGTTGCTCGCAGGACTCGAAGCAAGAAACCTTGGGTGGTCGGTGGTGGTTTGACAATGGGTCGGAAAAGAAGAAAGGTGGATGAAGAAGATGATGATGAAGTGATTTGCTTGGGAGAAAATTTGGAAGGGGAAGGGGCTGCAAGAGAGAAATTTGCATCTGCGTCTGGGGCTTCATGTTCATCACCAGATGATATGAAGAATGGTTTCGCGTATTTGGGAGAGACTGAGGATGATCCTGATCCTGATCCTGAAGAGGTGGTTGACCTCGAAGGCCATGATGGAGCTGAAGTGAGGATTGATGAGTGTTACGAAACCAAGGGTTTTCAGGTTAAGGAGGAAGAGAGGGATGAGGAGGGTGAAGGCTGTTCTGTAGCAGCTGTGAGAGCTGATAAAGGTGAGAGCTTTGATGATGATGAATACGGTACTAAACCTGAAAAGCCGGTTGTTTTGTTGCCCGATTCATGTAGGGGTGGACGTAGTAGCTCTGATGATGGATATGATTCGTTGTGGTCTTCAACGGAGAGTGAGGATGTTGAGACTAGTGACGATGATTTTAAGGTTGATGAGGATGATGACGATGATGATGATGTTGAGAGTGAATACTCAAGCAGTGAGGAGAGTTATTCTTCTGAAGATGATGAGAGGAGGGGATACAAGATGTTTAAGGAAAGAGTAAGAAAGGTGGTGAGTGAATCTGAGAGCAGTAGAGTTTGGAGAAGGAAAGGTGAAAGAAAGAATAAGCATGTAGAGAAGGAGTTGGTGGAGAAATGGAATGGTGGTGATTGTGCTAGCGTGGCATCTAGTAAATCAGAGATCAATAAGGAGGAAACAAAAAGGGCACAAGAGAATAAACAAAGAGCAAACAGAGTAGAGAATGTCAATAATGCTGATCCTGAAGTTTTGAGTGATCAGGGGAAAAGTTCAGGTCTCTATGTGTCTTCTGATGATGATGCGCTAGAGGATAAGGAGAAAGGAGTGAGGGATCATCAAAGGGTGTTTTTTCAAAAAGAGACAAGAGATTCAAATGTGATCAATAAGTGTGGGAAAAATAATAAGGTCAAGGCCAATGCTAAAGAAACTGGACATAAAGATGAGCTGCATGAAATGCTGAGGATGTCATCGACATCAAAGAACCACTGTTTTGAATTCTTCAATGAATGCTTTAGGGGCAAGCGTGATTCTAAAGATGTTTCAAGAGATTTGGATAAGAAGGTTGGTGTTGATGAGGGTCAGACTCCGCCATTTGGTTCAAGGGAGACAATTTCTTTAAACTGGAACTCCATGATGAAAGAAAAACCTGTTGAGAAATCTGAGTCACAGCAAGAGTTGGATATGCTGTGGGAAGAAATGGAGATGTTGCTTCAAGCTGAAAAAATTGGAGTCCAGAGTGATAATATAGAGATAAATGAACCAAGAGAAATCGAAGAAAATCCAGTCATTCGATGCAAACATGACACCATTTTTGATGAGCAGATAGGGATTCACTTTCTGATGTGTGCGTCGTTGTGTGCATTGCACATAATGCAGATAGATTCTGAGAGATATGGCAGAAGGGTGTCGTCTGGTGGAGGGAACAGCTCGCGACTTGATGGGGTTCTCTTCAGTGAATGTGGTGAAGACTCGGAAGCAGTTAGGTCTCACAATCATGGCACAGTTTGGGACCTTACTCCAGGCATAAAAGAAAGCTTGTTTCCTCACCAACAAGAGGGATTTGAGTTTATTTGGGCAAATTTGGCAGGAACCATTGAACTTTCAAAGTTGAAGATGGTTGATCCTCAGAGTGAGGGTGGGTGCATAGTTTCTCATGCTCCTGGAACTGGAAAGACGAGGTTGACCATGGTGTTTCTGCAGACATATTTGCAGGTGTTTCCTAAGTGTTTACCCATTATCATTGCTCCTGCCAACATATTACTCACTTGGGAAGATGAGCTGAGGAAGTGGAACATAGGAATTCCATTCCACAATTTGAACAATGCTGAATTATCAGGGAAGGAACATGCCATTAGGGAAGTTGATTGGTTATTCAACCAACAGCAAAAAAAGGATGTCATAAGAATGGTGAAGTTGTGTTCTTGGTACAAAGAGAAGAGCATTCTGTTAATCAGCTACAATCTTTATGAAAAGCTAGCCGGGGGAAAGTCTGAAGGAGATGGGGAGAAAGAGAAGAACAATAGAAAGAATGGAAAACAGAAGAAAAATAGAAAGATCGGAAAAGAGAAGAAACGTGTTGAAACTGAATTGGGAAATGTTCTGAGAGACTATCCTGATTTATTAGTTCTTGATGAAGGCCACACACCAAGGAACAAGCGAAGCTGTATTTGGAAGGTTCTCTCAGAGAGTAGAAGTCAGAAGCGGATCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTCTTGAACTCTACAATATTTTGTGCTTAATGAAACCATCTTTTCCTGACAGCATACCGCAGGAACTCAAGAAGTTCTTGAAAAACAAACTGATACAGGAAACGAAAGCTTCAAAAGACGAGAGTTGGGAACCCATTTCTGCTGGAAATCAAGCCGATGAAAAGATAAACCAGCTAAAGCTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGTATTCTTCAGAAGAATCTTCCTGGTTTAAGAGACTGTGTGCTGGTTTTGAAGCCAGAATGCTTGCAGAAAGACATTCTGGAGAGCATTGATTGTTCTCAAAATGCACTTAACTTCGAGCACAAGTTGGCCTTGGTCTCTGTTCATCCCTCCCTTTTCCTAAACTGTGCTCTGTCAAAGAAAGAAGAATCTGTTATTGATTCGGAGCTGTTGAAAAGGATTAGATTGGACTCTTATCAAGGGGTCAAAACCAAATTTCTGCTTGAGTTTGTGAGACTATGTGATGCAGTTAATGAGAAAGTCCTTGTGTTCAGCCAGTTCATTGATACCTTATGCTTGATCAGGGACCAGCTGGAGTCAGCCTTCAACTGGAGTGTGGGAACGGACGTGTTGTATATGCATGGAAAGCTGGATCAAAAGCAAAAGCAATTTCTCATTCACAATTTCAATGATGCAAATAGCCAGGCAAAGGTGTTGCTAGCTTCTATAAAAGCATCTTCTGAAGGCATTAACCTGGTTGGAGCTTCAAGGGTCGTGCTTGTTGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTGTAGAGCATATAGACTTGGACAGAAGAGGGTTGTTTATACTTATCATCTTCTTGCACAGGGCACCCCTGAATGTGCAAAATATGATAAACAGTCAGAGAAGGACCGCTTATCTGAACTGGTATTCTCAAGTAGGAATGTTGAAAATGATAAGCTTGAAAATGTTGGAGTGAAGTTTGAGGATAAAGTTCTTGATCTCATGGTTCAGCATAACAGTCTCAAGGACATATTTGGTCAATGTCTGGTTCAACCAAAGGACAGAGATTTGGAAACTTTGGGCCCTTAA 3483 0.4192 MYQAVARRTRSKKPWVVGGGLTMGRKRRKVDEEDDDEVICLGENLEGEGAAREKFASASGASCSSPDDMKNGFAYLGETEDDPDPDPEEVVDLEGHDGAEVRIDECYETKGFQVKEEERDEEGEGCSVAAVRADKGESFDDDEYGTKPEKPVVLLPDSCRGGRSSSDDGYDSLWSSTESEDVETSDDDFKVDEDDDDDDDVESEYSSSEESYSSEDDERRGYKMFKERVRKVVSESESSRVWRRKGERKNKHVEKELVEKWNGGDCASVASSKSEINKEETKRAQENKQRANRVENVNNADPEVLSDQGKSSGLYVSSDDDALEDKEKGVRDHQRVFFQKETRDSNVINKCGKNNKVKANAKETGHKDELHEMLRMSSTSKNHCFEFFNECFRGKRDSKDVSRDLDKKVGVDEGQTPPFGSRETISLNWNSMMKEKPVEKSESQQELDMLWEEMEMLLQAEKIGVQSDNIEINEPREIEENPVIRCKHDTIFDEQIGIHFLMCASLCALHIMQIDSERYGRRVSSGGGNSSRLDGVLFSECGEDSEAVRSHNHGTVWDLTPGIKESLFPHQQEGFEFIWANLAGTIELSKLKMVDPQSEGGCIVSHAPGTGKTRLTMVFLQTYLQVFPKCLPIIIAPANILLTWEDELRKWNIGIPFHNLNNAELSGKEHAIREVDWLFNQQQKKDVIRMVKLCSWYKEKSILLISYNLYEKLAGGKSEGDGEKEKNNRKNGKQKKNRKIGKEKKRVETELGNVLRDYPDLLVLDEGHTPRNKRSCIWKVLSESRSQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFLKNKLIQETKASKDESWEPISAGNQADEKINQLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPECLQKDILESIDCSQNALNFEHKLALVSVHPSLFLNCALSKKEESVIDSELLKRIRLDSYQGVKTKFLLEFVRLCDAVNEKVLVFSQFIDTLCLIRDQLESAFNWSVGTDVLYMHGKLDQKQKQFLIHNFNDANSQAKVLLASIKASSEGINLVGASRVVLVDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQGTPECAKYDKQSEKDRLSELVFSSRNVENDKLENVGVKFEDKVLDLMVQHNSLKDIFGQCLVQPKDRDLETLGP 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01330 1160 MobiDBLite consensus disorder prediction 291 315 - -
Vian2g01330 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 558 835 IPR027417 -
Vian2g01330 1160 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 593 814 IPR014001 -
Vian2g01330 1160 MobiDBLite consensus disorder prediction 233 261 - -
Vian2g01330 1160 MobiDBLite consensus disorder prediction 57 221 - -
Vian2g01330 1160 MobiDBLite consensus disorder prediction 233 330 - -
Vian2g01330 1160 Pfam SNF2-related domain 577 897 IPR000330 GO:0005524|GO:0140658
Vian2g01330 1160 MobiDBLite consensus disorder prediction 275 290 - -
Vian2g01330 1160 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 91 1154 IPR044567 GO:0080188
Vian2g01330 1160 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 961 1129 IPR001650 -
Vian2g01330 1160 Coils Coil 269 297 - -
Vian2g01330 1160 CDD SF2_C_SNF 930 1084 - -
Vian2g01330 1160 MobiDBLite consensus disorder prediction 92 148 - -
Vian2g01330 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 759 1117 IPR027417 -
Vian2g01330 1160 SMART ultradead3 563 822 IPR014001 -
Vian2g01330 1160 MobiDBLite consensus disorder prediction 716 743 - -
Vian2g01330 1160 MobiDBLite consensus disorder prediction 180 211 - -
Vian2g01330 1160 Gene3D - 883 1145 IPR027417 -
Vian2g01330 1160 Gene3D - 543 867 IPR038718 -
Vian2g01330 1160 MobiDBLite consensus disorder prediction 716 730 - -
Vian2g01330 1160 Pfam Helicase conserved C-terminal domain 965 1073 IPR001650 -
Vian2g01330 1160 SMART helicmild6 988 1073 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01330 Vian-Chr2 27416254 27420179 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01330 971 1125 RAD5 or RAD16-like Gene Family AT5G43530 36.129 6.82e-19 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian2g01330 SNF2_N 1.5e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01330 K10875 - gmx:100807262 1201.42