Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01322 ATGTATGTGCACAAGTCAGCAGAAGAAAGAAAGAGCACACCATGTTACAGCATGGGCAAGGGGAGTGCACATGGTTACGGTTGGAAGGAGTTAGTGGAGGTGGTCCAGCAGGTGGGAGGAGAAGAGTTGAACAATGAAATGAATCCAGGAGCTCCCATTGCTTGCAGGACGCGTTACAAGAGGAGAAAGTTATTTGAGAATGCGTTAATAATGAGTCGGAAGAAGAAGACACGGGAACCTGAAGCTGTTTTCTCGAAGGGTGAAGATACACGTGTGAAAATTGAACCTGTATCAGTCCCTTCGTCATCATCTTCTGCAGCTGTTTCAATGAATAGTGAAAGAGTATCTGAAAGTGATTCTCAGGGTTTGGGAGGACATGAGGATGACCCAATTGAAATCAGTGATGATGACGACGGCAGTGAGTTTGAAGAGAGGATGAGGGATTCTGAGAGCAATATATTTTGTGATGAAATAGAAGAGAAGAGTGACGAAGATGAAGGGTGTTTTATGTGGGATGATAAAGTTGAGAACTTTGACGATGATAACTGTGGTTGTGTATCTGACAACCCGGTTGTATTGTCGGTTGATGATGATGATGACGAAGATGATCATGAATATGATTTGCTTTGGTCTTCAACTGATAATGAGGATCATGAGACTGAATATGATTTGCTTTGGTCTTCAACTGATAATGAGGATCATGAGACTAGCGATGAAGATTTTCAGGTTGCGGATCATGATGGGTTTAAGTCTGAAGGCTCGATCTGGGACGAGAGTGATGACGATGATGTGAGGGGAGGTCATAGGAAGATAGTGAAGGGTATGGTGAGAAAGATGGAGAGTGATGCCGAAAACAGTGGGATTCGTAAAAGGGAAGGTAATGAACAGGTAGACGAGGAGGAGCTATGGATTATGGCTGATTGTACTAGTGAGATCTCTAGTAAATCTGAGATTTATAAGAAGGAAGGACAACATGCTGCACATAAACATGAAGCAAAGAGAGTGCAAAGTGTCATTGCTGATTCTGAATTATTTGGGGTTCACGGGGAAAATTCAGATTGTTTGATGTCTTCTGAAGCACAGGAGCATATGAAGAAAAGTGATAAAGATTATCAAAGTGTGACATTGCAGAAACAGACAGGAGATTCAACTGTTGTCGAGAATAGTGCGAGAAATAAAAATATCAATGTTGACTCGGTGGATATTGATGATATTAAAAGAAAAGAGAATCAACAAAACAAAGGAACAGGTCTGAGAAGTGTTTCTTTTCGTCCCAAAAACCGAGAGAAGATAGGAGATTCGGCTAAAATTGCAATAGAAAAGGACAAGGAAGGGGAACTTAAATATTGGTTTAATAGTAATAACCATAAGAAGGTCGGGGCAGTGGATGATGAAACAGGTGACAATGAGTTGTATGATGTACCAAGGATGCCATCCACATTGAAAAACAAATGTTATAAAATTTTTACTGAATGTTTTATGGGCAAGAATGATTCTGTTAAGGATGATTCAGATAAGTTGGATGAAAAGGATAATGTTTTACTTTCTCGGGAGCCAATCCCTTCGGATTGTTGCGTTGTGAACGCAGAAAAACCTGTTGAAAATTCAGAGCAAGAGGAGTTAGATACGTTGTGGGCTGAAATGGATATGTTGCTTCGAGCTGAAGAAATTGGAACCCAGGTTAATAATATGTCAAAGGAAGCAACAGAAAACGAAGAAGGTCCAGCCTCGAAATGCAAGCATGACACTATTTTTGATGAGCAGATTGGGATATATTGTAGATGGTGTGGTTGGATCGAAACTGAAATCAAATATATCACGCCACCATTTGTGGATTCTGAAAGATATGGTGGTAGAATGGTGTCATCCAGTGAAGGGAAAACCTCAGTATTGGAAGGGGGTCTGTTTGATGAGTCTGGTGATGACTCGGAGGCAATTTGGTCTCAGAATGAAGGCACTGTTTGGGACCTTATTCCTGACATTAAACAAAGTTTGTATCCTCATCAACAAGAAGGGTTTGAGTTTATTTGGAAAAACTTGGAAGGAAGTATTGACCTTGCCAAATTGAAGAAGGTTCATCCTTGCAATGAAGGAGGCTGCATTATTTCTCATGCTCCTGGAACAGGAAAGACTAAGTTGACCATGGTGTTTCTTCAGTCATATTTGCAATTGTTTCCAAAGTGTCTACCTATTATCATTGCTCCTTCCAGCATATTGCTTACCTGGGAAGACGAGCTAAGAAAGTGGAAACTAGGAATTCCATTCCATAACTTGAACAGTGCTGAATTATCAGGGAAAGAAGAACTCATCAATGAAGTTGATTGGTCTGGCAACCAGAGGCAGAATAAGGATGCCATTCGGATGGTGAAATTGTGTTCATGGTACAAAGAGAAGAGCATTCTACTAATCAGCTACAATTTGTATGAGAAGCTAGCAGGGGCCACATCTGTAGGTGGTGGTGGGGGAAAAGATAAGAATAATAAAAAGTTGGGGAAAAAGAAACATGCAAAGACAAGGGAGTACATTGAAAGTGGAATGGGAAAGGTTCTGCGTGACTATCCCGGTTTGCTAGTACTTGACGAAGGGCACACTCCTCGGAACCATAATAGTTATATTTGGAAGGTTCTTTCTGAAAGTAGAACTCAGAAGCGAGTTCTTCTCTCAGGGACTCCTTTTCAGAACAACTTTTTGGAACTTTACAATATTTTGTGCTTAATGAAACCATCCTTTCCTGAGAACATCCCACAAGAACTCAAGAAGTTTTGCCAAAGTAGACTAATGCAAGGAAGGAAAGCTTCGAAAGAAATGAGTTGGGAACCTGTTTGTTCTGGAGATCCAGCTGACGTAAAAATAAACCAGCTGAAAGTGTTGATGAACCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTGAGAAGAACCTTCCTGGGTTGAGAGAATGTGTGCTGGTTCTGAAGCCAGACATTTTGCAGCAAGAAACTCTAGAGAGCATTGAATGCTCTCAAAACGTACTAAACTTTGAACACAAATTGGCCTTGGTCTCAGTCCATCCATCCCTTTTCCTCAGCTGCTCCTTGTCAAAAAAAGAAGAATCTATTATTGACAAGGATAGGTTGGAAAAAATTCGACTGAACCCTTATGCAGGGGTGAAAACCAAGTTCCTGATCGAGTTTATAAGACTATGTGATGCATTAAATGAGAAAGTCCTTGTTTTCAGCCAATTCATTGATACTTTAAACTTAATCAAGGACCAGCTGGCGTCAGCCTTGAATTGGACTGTGGGGATGGAAGTGTTATATATGTATGGAAGGCTTGAGCAAAAGCAGAAACAGACCCTCATTTATAGTTTCAATGATGCAAAGAGCCGAGCAAAGGTGTTACTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAACTTAATCGGAGCTTCAAGGGTCGTGCTTCTTGATGTTGTTTGGAATCCATCAGTGGAAAGGCAAGCTATTTGCCGAGCATATAGACTTGGACAAAAGAAAGTTGTTTTTACTTATCATCTTCTTGCCCAGGGCACCCCTGAATGCACCAAATATCGCAAACAAGCAGAAAAGAATCGGTTATCTGAACTGGTTTTCTCAAATAAAAATTCTGAAAGCGATAAGCTCAAGAGGAGTGGAGTAATGCTTGAGGATAGAGTTCTTGACGTCATGGTTCAGCATGAAAAACTCAAGGATATGATTGGTGAATGTCTAATTCAACCTAGGAAGAGAGATTTGGAGATCTTGGGCCCTTAA 3768 0.4066 MYVHKSAEERKSTPCYSMGKGSAHGYGWKELVEVVQQVGGEELNNEMNPGAPIACRTRYKRRKLFENALIMSRKKKTREPEAVFSKGEDTRVKIEPVSVPSSSSSAAVSMNSERVSESDSQGLGGHEDDPIEISDDDDGSEFEERMRDSESNIFCDEIEEKSDEDEGCFMWDDKVENFDDDNCGCVSDNPVVLSVDDDDDEDDHEYDLLWSSTDNEDHETEYDLLWSSTDNEDHETSDEDFQVADHDGFKSEGSIWDESDDDDVRGGHRKIVKGMVRKMESDAENSGIRKREGNEQVDEEELWIMADCTSEISSKSEIYKKEGQHAAHKHEAKRVQSVIADSELFGVHGENSDCLMSSEAQEHMKKSDKDYQSVTLQKQTGDSTVVENSARNKNINVDSVDIDDIKRKENQQNKGTGLRSVSFRPKNREKIGDSAKIAIEKDKEGELKYWFNSNNHKKVGAVDDETGDNELYDVPRMPSTLKNKCYKIFTECFMGKNDSVKDDSDKLDEKDNVLLSREPIPSDCCVVNAEKPVENSEQEELDTLWAEMDMLLRAEEIGTQVNNMSKEATENEEGPASKCKHDTIFDEQIGIYCRWCGWIETEIKYITPPFVDSERYGGRMVSSSEGKTSVLEGGLFDESGDDSEAIWSQNEGTVWDLIPDIKQSLYPHQQEGFEFIWKNLEGSIDLAKLKKVHPCNEGGCIISHAPGTGKTKLTMVFLQSYLQLFPKCLPIIIAPSSILLTWEDELRKWKLGIPFHNLNSAELSGKEELINEVDWSGNQRQNKDAIRMVKLCSWYKEKSILLISYNLYEKLAGATSVGGGGGKDKNNKKLGKKKHAKTREYIESGMGKVLRDYPGLLVLDEGHTPRNHNSYIWKVLSESRTQKRVLLSGTPFQNNFLELYNILCLMKPSFPENIPQELKKFCQSRLMQGRKASKEMSWEPVCSGDPADVKINQLKVLMNPFVHVHKGSILEKNLPGLRECVLVLKPDILQQETLESIECSQNVLNFEHKLALVSVHPSLFLSCSLSKKEESIIDKDRLEKIRLNPYAGVKTKFLIEFIRLCDALNEKVLVFSQFIDTLNLIKDQLASALNWTVGMEVLYMYGRLEQKQKQTLIYSFNDAKSRAKVLLASIKASSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVFTYHLLAQGTPECTKYRKQAEKNRLSELVFSNKNSESDKLKRSGVMLEDRVLDVMVQHEKLKDMIGECLIQPRKRDLEILGP 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01322 1255 MobiDBLite consensus disorder prediction 96 119 - -
Vian2g01322 1255 Gene3D - 975 1242 IPR027417 -
Vian2g01322 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 929 IPR027417 -
Vian2g01322 1255 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 231 1249 IPR044567 GO:0080188
Vian2g01322 1255 Pfam Helicase conserved C-terminal domain 1061 1168 IPR001650 -
Vian2g01322 1255 Pfam SNF2-related domain 682 995 IPR000330 GO:0005524|GO:0140658
Vian2g01322 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 854 1215 IPR027417 -
Vian2g01322 1255 MobiDBLite consensus disorder prediction 403 426 - -
Vian2g01322 1255 Gene3D - 641 941 IPR038718 -
Vian2g01322 1255 SMART ultradead3 661 917 IPR014001 -
Vian2g01322 1255 CDD SF2_C_SNF 1050 1179 - -
Vian2g01322 1255 MobiDBLite consensus disorder prediction 95 153 - -
Vian2g01322 1255 SMART helicmild6 1083 1168 IPR001650 -
Vian2g01322 1255 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 691 909 IPR014001 -
Vian2g01322 1255 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1056 1214 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01322 Vian-Chr2 27304362 27315127 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01322 1066 1214 RAD5 or RAD16-like Gene Family AT5G43530 36.913 5.72e-20 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian2g01322 SNF2_N 4.1e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01322 K10875 - gmx:100812737 1375.53