Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01313 ATGGTGTTCGTCTTTCCAACGCTTCTGTACATGAAGCTAAAACCTTTATCGATTTTTGTTGTATTGTTTTGTGCATTTCCACATTATGATGCTGCCAGTTCTTCTGATTCGGAAGCAAATGCTTTGTTGAAGTGGAAAGGCAGCCTCGACAGCCACAGTCAAGCTTCTCTCTCTTCATGGAATGGCACTAATCCTTGCATCTGGCTGGGAATAGAATGTGATGATTCCCGTTCTGTTTCTCACATAAATCTTACACGTGTTGGATTAAAAGGTACACTTCAAACTTTTAACTTCTCATTATTTCCAAACATTCTCGTTCTGAATATGAGTTTCAACTACTTGTCTGGAAGTATTCCTCCACAGATTGAACAGTTGTCCAATCTCAACACGCTTGATTTGTCTACCAATCAACTCTCCGGTAACATTCCCAAAACCATCTGTAATCTTTCCAAACTAAAGTATCTGAATCTTAGTGTCAATAGTCTCTCTGGTTCTATTCCTAATGAAGTGGATCATCTCCAGTCTCTTCTCACATTCGATATATTTACCAACAACCTCTCTGGGTCAATCCCTCCTACCTTAGGAACCTTGCCCCTTTTAGAATCCATTCACCTTTTCGAAAATAAACTCTCTGGATCCATTCCTGCCAGTATTGGGAATTTGTCCAGGCTCACCCTGTTATCTTTATCTTCAAATCAACTCACCGGATCCATCCCTCCCCATATAGGAAATTTAACAAACGCCAAGGTCATATGTGTTATTGAGAATGAACTTACTGGCGAGATTCCAATAGAAATGGAGAAGCTTACTGGTCTCGAATGTTTGTCAATTGCTGATAATAATTTTATAGGCCAAATACCTCAGAACGTTTGCCTCGGCGGAAACATGAAATACTTCACAGCTGGTAATAACAATTTCACTGGCCCAATTCCAGAGACTTTGAAGAAATGCTACAGCCTTAAAAGACTCAGGCTTCAGCAAAACCATCTAACTGGGGATATAACAAACTTTTTTGATGTCCTTCCAGACTTGAACTACATTGATCTCAGTCAAAATAATCTTCACGGTAATATTTCACCTACTTGGGGAAAATTTCGCAGCCTCACAAGCTTCATGATTTTCAAAAACAATTTGTCAGGTGTTATTCCACCAGAACTAGGTGGGGCAACCAAATTACAGCTGCTTGATCTATCCTCAAACCATCTTACAGGAAACATTCCAGAAGATTTATGCAACTTGACCCTTTTGTTTGATCTTTCAATCAACGACAATAATCTTTCTGGAAATGTTCCCTCCAAAATAGAATCACTTGAGGGACTTAAATTTTTGGAGCTCGGCTCAAATAATTTTACAGGCTTAATCCAGAAAAAACTTGGAAATTTGCACAATTTATTGTCCTTGAATCTGAGCCAGAATAAATTTGAGGGAAATATTCCTTCTGAGCTTGGCAGTTTGAATTTTCTCTCAAGTCTTGATCTCAGTGGAAATTTGATGAGTGGAAGATTACCACCAACGCTTGGTGGAATAAAAGGCTTAGAAACATTGAATCTATCGCACAACAGTCTTTCAGGTGATCTCTCTAGCTTAGATGATATGATAAGCTTGACATCTTTTGATATATCATACAACCAGTTTGAGGGTCCACTTCCTGAAAATCAAGTCTTCCAGAATGTCACCATTGAAGCTCTGAGAAATAATAAAGGCCTGTGTGGCAATGTCGCAGGCTTGGAGCCTTGCCCGACAGTAAGTGGGAAATCTCATAATAATACGACAAGGAAAGTGCTAATAGCAGTTTTATCCGTTACTGTGGCCATTCTAATGCTTGCACTATTTATTTTTGGTGTCTCCTGTAATTTATGCCGAACTTCAAACAAAGAACAATTGCAGGCTCTAAGTTCACGATCTCCAAGCATGTCTCCAGTATGGAGTTTTGGAGGCAAAATTATGTTTGAGAACATTATTGAAGCCACCGAATATTTTGATGACAAATATCTCATTGGAGTTGGAGGTCAAGGTTGTGTTTACAAAGCAGTATTACCTACAGGTGAAGTTGTTGCTGTGAAGAAACTCCATTCAGTTTCAAATGGAGAAATCCTCGATCAGAAAGCTTTCACAAGAGAGATCCAGGCTTTGACAGAAATCCGACATCGTAACATTGTAAAGTTTCATGGGTTTTGTTCGCATTCACAATACTCATTTTTGGTGTGCGAATTCCTAGAGAGGGGCGATGTGAAGAAGATTTTGAAAGACGATGAACAAGCAACTGCATTTGATTGGAAGAAAAGGGTGGATGCTATTAAAGACGTGGCTAATGCTTTATGCTATATGCACCATGATTGCTTACCTCCAATTGTCCATCGTGATATATCAAGCAAAAATGTTCTTTTGGATTCAGAATATGTAGCTCATGTCTCAGACTTTGGAACAGCTAAGCTTCTTGATCATAGTTCAGCCAATTGGACATCATTTGCAGGAACCTTCGGATATGCTGCTCCAGAACTTGCGTACACAATGGAAGTAAACGAGAAATGTGACGTGTATAGTTTTGGGGTCTTGGCATTGGAAATATTATTTGGAAGGCACCCTGGTGATGTTACATCTTTATTGCAATCTTCTTTATCAATTGGTATGATCTCAACACTTGATCATATGGCATTGATGGATAACTTGGATGAACGTCTACCTCACCCAACAAGTTCTACTTTGAAAGAGCTGGTATCAATTCTCAAGATAGCAATTTCTTGCCTCACTGAAACTCCACGATCTCGCCCAACCATGAAGCTCGTAACCAACGAGCTTGCGATGTCGAGGTCATCTTCAATGTCACACACACAGCTGAAAGACTGA 2847 0.3952 MVFVFPTLLYMKLKPLSIFVVLFCAFPHYDAASSSDSEANALLKWKGSLDSHSQASLSSWNGTNPCIWLGIECDDSRSVSHINLTRVGLKGTLQTFNFSLFPNILVLNMSFNYLSGSIPPQIEQLSNLNTLDLSTNQLSGNIPKTICNLSKLKYLNLSVNSLSGSIPNEVDHLQSLLTFDIFTNNLSGSIPPTLGTLPLLESIHLFENKLSGSIPASIGNLSRLTLLSLSSNQLTGSIPPHIGNLTNAKVICVIENELTGEIPIEMEKLTGLECLSIADNNFIGQIPQNVCLGGNMKYFTAGNNNFTGPIPETLKKCYSLKRLRLQQNHLTGDITNFFDVLPDLNYIDLSQNNLHGNISPTWGKFRSLTSFMIFKNNLSGVIPPELGGATKLQLLDLSSNHLTGNIPEDLCNLTLLFDLSINDNNLSGNVPSKIESLEGLKFLELGSNNFTGLIQKKLGNLHNLLSLNLSQNKFEGNIPSELGSLNFLSSLDLSGNLMSGRLPPTLGGIKGLETLNLSHNSLSGDLSSLDDMISLTSFDISYNQFEGPLPENQVFQNVTIEALRNNKGLCGNVAGLEPCPTVSGKSHNNTTRKVLIAVLSVTVAILMLALFIFGVSCNLCRTSNKEQLQALSSRSPSMSPVWSFGGKIMFENIIEATEYFDDKYLIGVGGQGCVYKAVLPTGEVVAVKKLHSVSNGEILDQKAFTREIQALTEIRHRNIVKFHGFCSHSQYSFLVCEFLERGDVKKILKDDEQATAFDWKKRVDAIKDVANALCYMHHDCLPPIVHRDISSKNVLLDSEYVAHVSDFGTAKLLDHSSANWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGVLALEILFGRHPGDVTSLLQSSLSIGMISTLDHMALMDNLDERLPHPTSSTLKELVSILKIAISCLTETPRSRPTMKLVTNELAMSRSSSMSHTQLKD 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01313 948 FunFam Leucine-rich repeat receptor protein kinase MSP1 623 738 - -
Vian2g01313 948 SUPERFAMILY L domain-like 323 571 - -
Vian2g01313 948 FunFam Nuclear pore complex protein NUP107 35 190 - -
Vian2g01313 948 PRINTS Leucine-rich repeat signature 509 522 - -
Vian2g01313 948 PRINTS Leucine-rich repeat signature 128 141 - -
Vian2g01313 948 FunFam MDIS1-interacting receptor like kinase 2 739 939 - -
Vian2g01313 948 Gene3D Ribonuclease Inhibitor 188 292 IPR032675 -
Vian2g01313 948 PANTHER LEUCINE RICH REPEAT KINASE 2 194 940 - -
Vian2g01313 948 SMART LRR_sd22_2 125 151 - -
Vian2g01313 948 SMART LRR_sd22_2 221 247 - -
Vian2g01313 948 SMART LRR_sd22_2 413 439 - -
Vian2g01313 948 ProSitePatterns Tyrosine protein kinases specific active-site signature. 784 796 IPR008266 GO:0004672|GO:0006468
Vian2g01313 948 Gene3D Transferase(Phosphotransferase) domain 1 739 947 - -
Vian2g01313 948 Gene3D Ribonuclease Inhibitor 36 187 IPR032675 -
Vian2g01313 948 FunFam MDIS1-interacting receptor like kinase 2 isoform A 191 290 - -
Vian2g01313 948 SMART LRR_typ_2 461 485 IPR003591 -
Vian2g01313 948 SMART LRR_typ_2 125 149 IPR003591 -
Vian2g01313 948 SMART LRR_typ_2 269 293 IPR003591 -
Vian2g01313 948 SMART LRR_typ_2 390 413 IPR003591 -
Vian2g01313 948 SMART LRR_typ_2 221 245 IPR003591 -
Vian2g01313 948 ProSiteProfiles Leucine-rich repeat profile. 511 533 IPR001611 GO:0005515
Vian2g01313 948 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Vian2g01313 948 Gene3D Phosphorylase Kinase; domain 1 621 738 - -
Vian2g01313 948 SUPERFAMILY Protein kinase-like (PK-like) 637 933 IPR011009 -
Vian2g01313 948 ProSiteProfiles Leucine-rich repeat profile. 391 414 IPR001611 GO:0005515
Vian2g01313 948 Pfam Protein kinase domain 662 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01313 948 Pfam Leucine Rich Repeat 391 413 IPR001611 GO:0005515
Vian2g01313 948 Pfam Leucine Rich Repeat 151 173 IPR001611 GO:0005515
Vian2g01313 948 Gene3D Ribonuclease Inhibitor 293 587 IPR032675 -
Vian2g01313 948 ProSiteProfiles Protein kinase domain profile. 660 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01313 948 SUPERFAMILY L domain-like 36 334 - -
Vian2g01313 948 FunFam Uncharacterized protein 291 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01313 Vian-Chr2 27134356 27137290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01313 16 832 Receptor kinase-like Gene Family AT4G08850 39.892 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian2g01313 Pkinase 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01313 - - gmx:100809509 1389.4