Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01308 ATGCGCGACCCCCAATCTGGCCTCGTCTCAATCCGCTCCCCCCTTACTTCCTCTCAAACATCATCGTTTTGTCCCTCGTCAAAACCCTACCCTATACTATGTCACCATCTTCGCCATCAATTCCCTTCTCATCCCTATGACCTTGACCTCATGACGTCCGAAATCTGCCTCAACATCGTCCTCAACATCACCAAAGCCGTAATCGATGGCCACAACTTCAACGTCATCGCCTCAATGCTCGCGGCCTCCGGTGTAGTTCAGGCAGTGTTGGAATTTGAGGCTGATGAGGGTGATGCTGGAATCACTTTTTTTGTACCGGTGGATGATGCCTTTGCTGATCTTCCGCCCTATGTGGCCCTTCAGTCTCTACATGTAGATAAAAAAGGGGTGGTTCTTAAATTCCATGTCCTCCATTCCTATTACCCTCTTGGCTCGCTTGAATCGGTTGTTAACCCCTTCCAACCTACCCTCGCCACTGAGGCCATGGGTGCTGGTAGTTTCACACTCAACATTTCGCGTCTGAATGGCTCTATTTCCATCAACACCGACATTGTACAAACCTCAGTTACACAGACCGTCTTTGATCAGAACCTGTTGTCATTTTTGGGGTTTCCAAGGTGGGTCCCACCTCGGAGGAGATGGAGAACTCAATGGCTAAAAAAGGTCAAGGGTAAAAATAAAGTTTGCGCCCTCAAACAGCTTGGTAAACTCGTTGATTCCCACCTCTCTACCAGGAAAACCGTCGAGGAAAACAACGAGCTTGCTTTGATTTCTTCCCTATTGTGTCCTTTCACCTCGCACACGGTTGGGTTGGAAGCGATTGGGATTCTTGTCAATTTGGATTTGGGTTTGGAGCTGAAGAGGAATCTCATGCAATCCGCGAAGGTTTCATTGTTGGTGGACATCATGAACGAGGGAACCATCCAGACGAAGATGAATTGCACCAAGTTGATTCAATGGTTGTTGGTGGAAGGTAACCCCTCAAAGACAACGCAGAGAGGATAA 1005 0.4816 MRDPQSGLVSIRSPLTSSQTSSFCPSSKPYPILCHHLRHQFPSHPYDLDLMTSEICLNIVLNITKAVIDGHNFNVIASMLAASGVVQAVLEFEADEGDAGITFFVPVDDAFADLPPYVALQSLHVDKKGVVLKFHVLHSYYPLGSLESVVNPFQPTLATEAMGAGSFTLNISRLNGSISINTDIVQTSVTQTVFDQNLLSFLGFPRWVPPRRRWRTQWLKKVKGKNKVCALKQLGKLVDSHLSTRKTVEENNELALISSLLCPFTSHTVGLEAIGILVNLDLGLELKRNLMQSAKVSLLVDIMNEGTIQTKMNCTKLIQWLLVEGNPSKTTQRG 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01308 334 SUPERFAMILY FAS1 domain 69 194 IPR036378 -
Vian2g01308 334 FunFam Fasciclin-like arabinogalactan protein 4 61 211 - -
Vian2g01308 334 Pfam Fasciclin domain 72 192 IPR000782 -
Vian2g01308 334 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 45 198 IPR033254 -
Vian2g01308 334 ProSiteProfiles FAS1/BIgH3 domain profile. 60 198 IPR000782 -
Vian2g01308 334 MobiDBLite consensus disorder prediction 9 24 - -
Vian2g01308 334 Gene3D FAS1 domain 61 199 IPR036378 -
Vian2g01308 334 SMART fasc_3 102 201 IPR000782 -
Vian2g01308 334 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01308 Vian-Chr2 27022272 27023776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01308 219 324 U-box Gene Family AT3G49810 53.774 6.57e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01308 - - pvu:PHAVU_009G244800g 270.781