Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01283 ATGCTATCAAAATATGGCCAGATTCATCCTGCTCAGCTGATAGGAATGCCTACTGCTAGAATTCCTCTGCCACTTGATCTGAGTGAGGAGCCTATATTTGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGCAGACAATACCGGACAAAACTTGAATCACAGAACAAACTCATCAAAGAACGGAAACCATATCTTCATGAGTCTCGCCATCTACATGCATTGAAGAGAGCCAGAGGTTCTGGAGGTCGCTTCTTGAATACAAAAAAGCATGAAGAGTGTAAACCCACTTCACAAAACCATGACATAGATGTTTCGAGGTGTACTCATTTGAATCTGAGGGGAAACATGTCAGAATCTAAGGCTCGTCAGTTGAACTACAGAGATGGTGCTTCCACAGCCACCTGTTCAGATATTTCTAGTGCATCTAATAGTGGTGATCTCTTCCAGCAACATCAACCTGACATTAGATTATGTGGTTACCCTTCTCATATAGGAAGGAACATGCAGGGTTACTCTGCTGATATCATTGGTAGTGGTGGTGCAAAGTATTGTGTTAGACATTGTAACTCACCACCATAA 582 0.4244 MLSKYGQIHPAQLIGMPTARIPLPLDLSEEPIFVNAKQYHAILRRRQYRTKLESQNKLIKERKPYLHESRHLHALKRARGSGGRFLNTKKHEECKPTSQNHDIDVSRCTHLNLRGNMSESKARQLNYRDGASTATCSDISSASNSGDLFQQHQPDIRLCGYPSHIGRNMQGYSADIIGSGGAKYCVRHCNSPP 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01283 193 PRINTS CCAAT-binding transcription factor subunit B signature 31 53 IPR001289 GO:0003700|GO:0006355
Vian2g01283 193 PRINTS CCAAT-binding transcription factor subunit B signature 62 85 IPR001289 GO:0003700|GO:0006355
Vian2g01283 193 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 152 IPR001289 GO:0003700|GO:0006355
Vian2g01283 193 ProSiteProfiles NF-YA/HAP2 family profile. 28 88 IPR001289 GO:0003700|GO:0006355
Vian2g01283 193 Gene3D - 28 89 - -
Vian2g01283 193 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 30 85 IPR001289 GO:0003700|GO:0006355
Vian2g01283 193 SMART cbf3 27 88 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01283 Vian-Chr2 26490339 26491086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01283 5 178 CCAAT-HAP2 Transcription Factor Family AT1G17590 50.273 3.42e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vian2g01283 CBFB_NFYA 3.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01283 K08064 - gmx:100500765 280.026