Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01267 ATGGAGGAGGGTCAATGTTTGATCAGGAGTAAGAGAAAGTACTCTTTGAGCTCTAGTCTTCATGGTTCTTCTACTGATTACCCTTCCTGTGATGACCACTCATGGGAAGAGCAAGCCTTTGCAAAAGATGCTGCTTGGTCTGGTTGTGTGTGGCCACCACGATCATATTCTTGTACCTTTTGTACAAGGGAATTTAGGTCAGCACAAGCTTTAGGAGGTCATATGAATGTTCATAGAAGAGATAGAGCAAGACTAAAGCAGCCACATAGCCCTCAGAATGAAATCCTCAATTATGATCTTGAGAAAACTCAAGCCCAGAATTCGGTTCAAATTTCTTTCACTTCGTTGGGTTACTTATACCCACCTTCTATCAGTGGATTGGCTCATAACACTAACCCTAATTCTGATCCTTATTCTCATGTTGTTGCTTCACCTTCCAAAGTTTTATGCACACCAGTTAACAAAAGATGCAGAGAGAAACCCCAGATTCCACAATACAATAGTTCTTCAATTTTCAAAGGATGTCATGAGTCTTCCCCTTCTCTTTCTTCCAAATCCTGGCCAAATTTAACTGATGACTTCAGATTTTGTTCGAGTAGGCTCGATCTTGAAGCTAGTGTTGAGAAAAAATTGCAGGGATTCGATTCTGGGTGTAGGAGTGAGGGTGATAAGGGTAAAACTGAGGTGGGTGTGAGCATGAACTTGTTTATGAGTCGAGCTCACCCAGTTGTGCAGTCTGAGAATAAAGAGACAGATACAAGTTTCAAGAAGAGAAAATCAGAAGCTTCATCCATTCCATTCTTCCCCAAATCATGTTCGGTTGATAAGGATCATGTGCAGTCAGAGACGTTTGATTTTAGCCCTAGCTCTATAGAAGAGCTAGATCTGGAGCTAAGGCTTGGTCATAGGTCCGAGGTATAG 921 0.418 MEEGQCLIRSKRKYSLSSSLHGSSTDYPSCDDHSWEEQAFAKDAAWSGCVWPPRSYSCTFCTREFRSAQALGGHMNVHRRDRARLKQPHSPQNEILNYDLEKTQAQNSVQISFTSLGYLYPPSISGLAHNTNPNSDPYSHVVASPSKVLCTPVNKRCREKPQIPQYNSSSIFKGCHESSPSLSSKSWPNLTDDFRFCSSRLDLEASVEKKLQGFDSGCRSEGDKGKTEVGVSMNLFMSRAHPVVQSENKETDTSFKKRKSEASSIPFFPKSCSVDKDHVQSETFDFSPSSIEELDLELRLGHRSEV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01267 306 PANTHER OS07G0101800 PROTEIN 29 303 - -
Vian2g01267 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Vian2g01267 306 Gene3D Classic Zinc Finger 52 112 - -
Vian2g01267 306 Pfam C2H2-type zinc finger 56 80 - -
Vian2g01267 306 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Vian2g01267 306 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Vian2g01267 306 SMART c2h2final6 56 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01267 Vian-Chr2 26140433 26141353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01267 34 87 C2H2 Transcription Factor Family AT2G37740 79.630 2.52e-24 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g01267 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01267 - - vra:106758996 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01267 2 26140433 26141353 Vian2g01267 2 26140433 26141353 ECH
Vian2g01267 2 26140433 26141353 Vian7g01639 7 25683023 25683763 ECH