Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01256 ATGTCGTTGCACCGTGGTGAAGGAGATGAGCTCTACGAGCAGCTGTGGAAGGCGTGTGCAGGACCCCATGTGGAAATTCCTCGTGCAGGCCAAAGGGTCTTCTACTTCCCTCAGGGACACATGGAACAGTTAGAAGTATCAACAAATCAGGAACTAAATCAAAGGATTCCACTGTTCAAACTTCCCTCCGAGATCCTTTGTCGTGTCGTCAACGTCCATTTATTGGCCGAACCAGAAACAGATGAGGTTTATGCACAGATTACTCTGGTACCGGAAAATAATCAAACTGAGCCTACAAGCCCTGATCCATGCCCTTCTGAAGTTCCAAGGCCAAGAGTTCACTCCTTCTGCAAGGTCTTAACCGCCTCTGATACAAGCACTCATGGTGGCTTTTCTGTCCTTCGGAAGCATGCCACTGAATGTCTTCCAGCATTGGACATGTCGAAATCAACCCCAACTCAAGAATTGGTTGCTAAGGATCTTCATGGATATGAATGGCGCTTTAAGCATATATTTAGAGGAGTTCTCGCAACTGCATCTCATGCTGTAGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCAAGGACAAGCCAGTTTATTGTAAGTGTGAACAAGTATTTAGAGGCTATCAACCAAAAATGTAATGTTGGCATGAGATTGAAGATGAGGCTTGAAGGGGATGATTCTACTGAAACAGACAAAAGAATTTCGGGCACAATAATTGGAGTTGAGGATATTTCCCCTCATTGGGTAAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAAACTCCATCTTTTCCAAGACCTGATAGAGTTTCACCATGGGAGATAGAACCCATTCTGGCTTCTGTACCTACAACAATGTCATCTCAACCTGTTGTTCTAAAGAATAAAAGGCCTCGACAAGCAACTGAAGTTCCAGATCTTGGAGACACACCATTAATTGCTCCTACTTTCTGGGATCCTGGTCTGACACAGTCAGATATTACACAACTTGGTGTTATTACCGAAAGCAAAAGGAGTGAAAGTACTGCTCACATGTGGCATCATAACAATAACAGCAGCAGCAATATATCAATGAATCAGAGAAAAGCAAGTTGGCTGTCTTCTCCTTCTCATTTATATCTTGACACAAGTGATGATAGCAAGAGTATATCAGCTTCTCCTATTTCAAAAATTCACTCGGAAAGATTGAACAATGACCATTGCCTTGACCAGGTTGATAAGGAGATCAGCAATGTAGAGCCTGCAACAGGCTGCAGATTGTTTGGGATTGACCTTATTGATCATACAAGGAGCAACTCTCTTTCTGTAGATAATGCATCTGCAGTCACATCTGAGGGCAGAACTGATGCAAACCATGAGTCTGATATCTCAAAGGCTTCTAAAGAATGGAAACAAGAACAGCTACAAGTATCGCCAAAAGAGACTCAAAACAAGCAAATTTGTAGCAGAAGTTGCACTAAGGGGGTTGCAGTGGGTCGTGCTGTGGACTTGACCACATTGGATGGATATGAACAACTTGTAGATGAATTGGAGAAGATGTTCGACATAAAGGGACAGCTTCAACACAGGAACAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCGTGGCCTGAATTCTGTAACATGGTGAGAAGAATCTTCATTTGCTCAAGCCAGGATGTGCACAAACTGAGCTCAGGGAGCAAACTACCTATCTCTTCAATGGAAGACTCTGTAATAAGCTCAGACACAGCTGAGACCTGA 1785 0.4303 MSLHRGEGDELYEQLWKACAGPHVEIPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSEILCRVVNVHLLAEPETDEVYAQITLVPENNQTEPTSPDPCPSEVPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDLHGYEWRFKHIFRGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLEAINQKCNVGMRLKMRLEGDDSTETDKRISGTIIGVEDISPHWVNSKWRSLKVQWDETPSFPRPDRVSPWEIEPILASVPTTMSSQPVVLKNKRPRQATEVPDLGDTPLIAPTFWDPGLTQSDITQLGVITESKRSESTAHMWHHNNNSSSNISMNQRKASWLSSPSHLYLDTSDDSKSISASPISKIHSERLNNDHCLDQVDKEISNVEPATGCRLFGIDLIDHTRSNSLSVDNASAVTSEGRTDANHESDISKASKEWKQEQLQVSPKETQNKQICSRSCTKGVAVGRAVDLTTLDGYEQLVDELEKMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKLSSGSKLPISSMEDSVISSDTAET 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01256 594 Gene3D - 480 572 - -
Vian2g01256 594 SUPERFAMILY CAD & PB1 domains 487 560 - -
Vian2g01256 594 Gene3D - 214 287 - -
Vian2g01256 594 CDD B3_DNA 114 206 IPR003340 GO:0003677
Vian2g01256 594 FunFam Auxin response factor 214 287 - -
Vian2g01256 594 Pfam Auxin response factor 179 260 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vian2g01256 594 MobiDBLite consensus disorder prediction 445 467 - -
Vian2g01256 594 SUPERFAMILY DNA-binding pseudobarrel domain 107 186 IPR015300 -
Vian2g01256 594 Gene3D - 113 206 IPR015300 -
Vian2g01256 594 Pfam AUX/IAA family 411 571 IPR033389 -
Vian2g01256 594 MobiDBLite consensus disorder prediction 453 467 - -
Vian2g01256 594 ProSiteProfiles PB1 domain profile. 484 565 IPR000270 GO:0005515
Vian2g01256 594 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 174 572 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01256 Vian-Chr2 25969412 25973820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01256 4 577 B3 DNA Binding Superfamily AT4G23980 46.505 1.46e-175 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01256 K14486 - gmx:100799088 669.463