Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01238 ATGCAAAGATTGGTCATAATGGATCCACGTCTTTGTGGGTTTAATGGTCCCCCTAATGAAGTCCGGTTAGGAAATCAGAGATTTGAAAATGGTTTCTTTGATCAAAGTAGGGACTTTGGTTACCTTCAATCCAATCTAGTGCCTTCCAAGACGCCTTCTTCATCCTCGGTTTTGACTCATGAGGAACCTTCTCCGGAGGAATGTGAATTTTCTGATGCAATTTTGAGTTACATCAGTCAGATCCTTATGGAGGAAGACATGGAAGATAAGACATGTATGCTGCATGACTCTTTGGATCTTCAAATTGCTGAGAGATCATTCTATGAGGTGATAGGTGAAAAGTACCCTTCTTCGCTTTTAGGAAATCCAAGTCCTGTTGATCCAGGCGGTGGGGTTGGGGATCATAATTTCTCTGAAAATTATGGTACCTGTTCTTACAATGATGGTGATCTCAGTAGCATTTTTACTAATTTTCGTCAAAATTTGGGGGAACTCCCTAACCATAATTTACGAGGCAATAGCATTTCACAGTCATCTTGTAGCTCTTCAAATAGTGTGATAAGTAGTGTGGAAGGACCTGTGGACTCTCCAAGCAGTATTCTCCAGGTCCCTGATCTGAACAGTGAGAGTCAATCCATTTTGCAATTTCAGAAGGGTGTTGAGGAAGCTAGCAAGTTTCTTCCAAGTGGAAATGATCTCTTTGCTAATTTGGGTGTGGCTAATTTTTCAAAACTGGAGCCTAAAATGGGGTGCGATGAATTGTCAGTTAAGGTGGAGAAGGATGTGGGGGAGTCTTTTCTTGCTGGGTCCAAAGGAAGAAAACATAATCTCAGTGAAGAGGTGGATTTTGAAGAAAATAGAAGCAGCAAGCAAGCTGCAATTTTCTCCGAACCTACATTGCCATCATCTTCTATTGATGTAATCCTGCTTCATAGTTTAGGGGATGGTAAGAAGGTTTTCATGGCCCGTCGTGAGGCTTTGCAAACTAAGAATGACAAGATAGCACTGTCAAATGGTAAATCAAAGGCTTCCAACAGTGGTAAGGGACGTAGTAAGAAACAAAGTGGGAAAAAGGAAGTCATTGATTTGAGAACACTTTTGGTTCTTTGTGCACAAGCTGTTGCAGCAGATGACTATAGTGGCGCACATGAGTTTCTAAAGCGGATCAGGAAGCACTCAAGCCCTTTTGGGGATGGAAATCAGAGGTTGGCCCATATCTTTGCTGATGGCCTTGAAGCGCGCTTGGCTGGGACTGGTAGCCAAATTTATAAAGGACTTGTGAGCAAAAGAACATCCGCTGCTGATTTTCTGAAGGCTTATCATCTGTATCTTGCTGCTTGCCCTTTTAGGAAGATGTCTAGTTTTATCTCTAATGTCACAATAAGGGAATCTTCCACAAATTCAGCGAGAGTCCATGTTATAGATTTTGGTATCCTTTATGGTTTCCAATGGCCTACTTTTATTCAGAGACTTTCATTAGCAGTTGGAGGACCACCTAAACTTCGAATTACAGGAATAGACTTCCCACAACCTGGTTTCAGGCCTGCTGAGAGAATTGTAGAAACTGGACGCCGCTTGGCAGCTTATGCTGAATCATTTAAGGTGCCATTTGAGTATAATGCTATAGCAAAAAAGTGGGAAACAGTTCAGCTTGAGGAACTGAAGATTGATAGGGAGGAATATCTTGTTGTCACCTGTTTTTATCGTGGTAAAAATGTGCTTGATGAATCTGTGCTCGTGGACAGTCCGAGGAACAAATTCCTCAGTTTGATAAGGAAGATCAACCCGGATTTATTCATTCATGGCATTACAAACGGAGCCTTTAATGCGCCTTTCTTTGTTACTCGATTCAGGGAGGCACTGTTTCACTACTCTTCACTTTTTGACATGCTTGAAACTATTGTGCCTCAAGAGGACTGGGAGAGGATGCTAATAGAGAAAGAGATTTTTGGCAGGGAAGCATTGAATGTCATAGCTTGTGAAGGGTGTGAGAGAGTAGAGAGGCCAGAGACATATAGGCAGTGGCAAGCCCGGATTCTTAGGGCTGGATTTTCGCAACAATCTTTTGAACATGCTTTAGTTAAGAGGGCAATAGAGAAAGTATCAACTAGCTACCACAAGGATTTTGTTATTGATGAAGATAGCCAGTGGTTGTTGCAAGGTTGGAAGGGGCGGATTGTTTATGCCCTTTCTTGCTGGAAACCAGCATGA 2211 0.422 MQRLVIMDPRLCGFNGPPNEVRLGNQRFENGFFDQSRDFGYLQSNLVPSKTPSSSSVLTHEEPSPEECEFSDAILSYISQILMEEDMEDKTCMLHDSLDLQIAERSFYEVIGEKYPSSLLGNPSPVDPGGGVGDHNFSENYGTCSYNDGDLSSIFTNFRQNLGELPNHNLRGNSISQSSCSSSNSVISSVEGPVDSPSSILQVPDLNSESQSILQFQKGVEEASKFLPSGNDLFANLGVANFSKLEPKMGCDELSVKVEKDVGESFLAGSKGRKHNLSEEVDFEENRSSKQAAIFSEPTLPSSSIDVILLHSLGDGKKVFMARREALQTKNDKIALSNGKSKASNSGKGRSKKQSGKKEVIDLRTLLVLCAQAVAADDYSGAHEFLKRIRKHSSPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVSKRTSAADFLKAYHLYLAACPFRKMSSFISNVTIRESSTNSARVHVIDFGILYGFQWPTFIQRLSLAVGGPPKLRITGIDFPQPGFRPAERIVETGRRLAAYAESFKVPFEYNAIAKKWETVQLEELKIDREEYLVVTCFYRGKNVLDESVLVDSPRNKFLSLIRKINPDLFIHGITNGAFNAPFFVTRFREALFHYSSLFDMLETIVPQEDWERMLIEKEIFGREALNVIACEGCERVERPETYRQWQARILRAGFSQQSFEHALVKRAIEKVSTSYHKDFVIDEDSQWLLQGWKGRIVYALSCWKPA 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01238 736 MobiDBLite consensus disorder prediction 331 350 - -
Vian2g01238 736 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 292 727 IPR005202 -
Vian2g01238 736 MobiDBLite consensus disorder prediction 331 356 - -
Vian2g01238 736 Pfam GRAS domain family 363 734 IPR005202 -
Vian2g01238 736 ProSiteProfiles GRAS family profile. 354 734 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01238 Vian-Chr2 25636015 25638225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01238 66 735 GRAS Transcription Factor Family AT2G37650 52.402 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian2g01238 GRAS 2.7e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01238 - - gmx:100801824 1246.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01238 2 25636015 25638225 Vian2g01238 2 25636015 25638225 ECH