Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01231 ATGGCTGACGTGGTGAAATCTGAGGAGTGTTGCCAAGAGAATAAGCAGTCCACTGCTGCTTCCTGCTCCTCTGTATCTGAAGGCAGTGGCAGTGCAATTCACAAGTCTCCTGGGATATGTAGTCCTGCATCCACATCACCTTCCCATCGGAGGACCACCGGTCCTATCAGGCGTGCTAAGGGTGGTTGGACAGCACAGGAGGATGAAACATTAAGGAATGCTGTGGCAGTTTTTAAGGGAAAAAGTTGGAAGAAAATAGCTGAGTTTTTTCCTGATAGATCAGAAGTCCAGTGTTTGCATAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCTTGGACACAGGAGGAGGATGATAAAATTGTTGAATTGGTGACAAAATATGGGCCAACAAAATGGTCTTTGATAGCCCAGTCTTTACCTGGTCGAATAGGCAAACAATGTCGAGAGCGGTGGCACAATCATCTTAACCCTGAGATAAAGAAGGATGCCTGGACTTTGGAGGAGGAATTAGCCCTGATGAATGCTCATCGCATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCATGGAAGGACTGATAATGCAATAAAGAATCATTGGAATAGTTCTTTAAAGAAAAAGTTAGATTTTTATTTAGCTACAGGAAGACTTCCACCAATTCCCAAGAGTAGTCCACAAGTTACTGTTAAAGATACAATTAGACGTTCTGCTAGTAAATCAATACTTGTTTATTCAAATAAAGAATTAAATGCAGCTGTTGAAACATCCTCTGAAACTACAGCCATTAGTAAACTAGATGACAGTGGCAGGAATCAATTTGAGTCCTCGGGAACAGTTAGAGAAGTTGGTGATTCTTCAAGTGTTCCTGCAAATGAATCTGCCGATTCTGACTGTGTAGAATGCAAGCCTGAATCTTCCAACATCGATCTTAGCTGTAGCAACTCAGAACAAGTGTCAAAAGCTAATTGGGCAATAACTTATGGGCCAAGACCTGACAATTCTGGACTAAATGGAAACTCAACTTTTGAGCATTGTACAAGCAATGGTAACATGAGCACTACAAGGTTAATTGGAACGTCTTTGCAAGAAAGTCCAACCTGTGGTTCTCTGTGTTATGAGCCACCACAGTTACATGGTTCAGTTCCCATAGATTCTCTTTATTTAAATTATATCTGCCAGCAGAATGAGTTTTGTTCGAGTCCAACTTTGTCACCTCTTGGTTTCTTCACTCCACCTCGTGTAAAGGGTGATGAATTATGCACTGACACACCTGAATCAATTTTGAAAAGGGCTGCCAATACTTTTCCAAATACTCCTTCCATATTGAGGAGGAGGAAAACTGGGTTCCAAGCACTCACTAGTCCTAGTAAAGTTTTGAAGGTAGATAATGATACACGTTCTTCTAATGAAACAGAGAGAACCAATGATGATTCTGGTTCTAGGCATTTCTCCAGGAGTCCGGCAAGCCATGGCAATGTGATTGACATCTCCGGTAATAAGACATTCAATGCATCTCCCCCATATAGGTTAAGATCCAAGCGAACAGGGATCGTTAAGTCAGTGGAGAAACAACTGGAGTTTGCTTTTGACAAAGAGAAGAATGATGACAAGAAAAGTAATGTCATGACTGAAGATTGTCTCCATGAAAAAAAATTGGTTGCCACGTAG 1683 0.4135 MADVVKSEECCQENKQSTAASCSSVSEGSGSAIHKSPGICSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAVFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVTKYGPTKWSLIAQSLPGRIGKQCRERWHNHLNPEIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLHGRTDNAIKNHWNSSLKKKLDFYLATGRLPPIPKSSPQVTVKDTIRRSASKSILVYSNKELNAAVETSSETTAISKLDDSGRNQFESSGTVREVGDSSSVPANESADSDCVECKPESSNIDLSCSNSEQVSKANWAITYGPRPDNSGLNGNSTFEHCTSNGNMSTTRLIGTSLQESPTCGSLCYEPPQLHGSVPIDSLYLNYICQQNEFCSSPTLSPLGFFTPPRVKGDELCTDTPESILKRAANTFPNTPSILRRRKTGFQALTSPSKVLKVDNDTRSSNETERTNDDSGSRHFSRSPASHGNVIDISGNKTFNASPPYRLRSKRTGIVKSVEKQLEFAFDKEKNDDKKSNVMTEDCLHEKKLVAT 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01231 560 FunFam Transcriptional activator Myb isoform A 112 164 - -
Vian2g01231 560 Gene3D - 112 163 - -
Vian2g01231 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 213 IPR017930 -
Vian2g01231 560 MobiDBLite consensus disorder prediction 468 485 - -
Vian2g01231 560 CDD SANT 166 209 IPR001005 -
Vian2g01231 560 Pfam Myb-like DNA-binding domain 164 207 IPR001005 -
Vian2g01231 560 Pfam Myb-like DNA-binding domain 60 106 IPR001005 -
Vian2g01231 560 Pfam Myb-like DNA-binding domain 112 158 IPR001005 -
Vian2g01231 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 106 IPR017930 -
Vian2g01231 560 MobiDBLite consensus disorder prediction 270 304 - -
Vian2g01231 560 MobiDBLite consensus disorder prediction 38 52 - -
Vian2g01231 560 SUPERFAMILY Homeodomain-like 109 205 IPR009057 -
Vian2g01231 560 Gene3D - 165 236 - -
Vian2g01231 560 SUPERFAMILY Homeodomain-like 57 113 IPR009057 -
Vian2g01231 560 MobiDBLite consensus disorder prediction 270 298 - -
Vian2g01231 560 MobiDBLite consensus disorder prediction 21 65 - -
Vian2g01231 560 FunFam Transcriptional activator Myb isoform A 59 111 - -
Vian2g01231 560 ProSiteProfiles Myb-like domain profile. 107 158 IPR001005 -
Vian2g01231 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 162 IPR017930 -
Vian2g01231 560 ProSiteProfiles Myb-like domain profile. 55 106 IPR001005 -
Vian2g01231 560 ProSiteProfiles Myb-like domain profile. 159 209 IPR001005 -
Vian2g01231 560 CDD SANT 63 106 IPR001005 -
Vian2g01231 560 PANTHER MYB PROTEIN-RELATED 60 132 - -
Vian2g01231 560 MobiDBLite consensus disorder prediction 486 512 - -
Vian2g01231 560 FunFam Transcription factor MYB3R-2 165 230 - -
Vian2g01231 560 Gene3D - 59 111 - -
Vian2g01231 560 CDD SANT 114 158 IPR001005 -
Vian2g01231 560 MobiDBLite consensus disorder prediction 463 512 - -
Vian2g01231 560 SMART sant 163 211 IPR001005 -
Vian2g01231 560 SMART sant 111 160 IPR001005 -
Vian2g01231 560 SMART sant 59 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01231 Vian-Chr2 25220654 25227044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01231 5 552 MYB Transcription Factor Family AT3G09370 48.307 1.67e-157 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian2g01231 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01231 K09422 - gmx:778081 1012.29