Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01198 ATGCTTCAGACCTTGTCTATTTATAGTACTATGCTCTCTGGTGAGATTCCTCCTGAAATAGGGAACTGTTCAGAGCTTGTCAACTTATTTTTTTATGAGAATGACCTCTCTGGTTCCCTACCAAGAGAGATTGGTATGCTTCAGAAGCTGGAAAAGATACTGCTGTGGCAAAACAATTTTGTTGGGGACATTCCTGAGGAAATTGGTAACTGCAGAAACTTGAAGATTCTTGATGTCTCTTTGAATTCTCTCTCAGGTGGAATACCCCAAAGTCTGGGGAAACTCTCAAATCTTGAAGAACTTATGTTGAGTAACAATAACATCTCTGGTTCAATACCACCAGCTCTGTCCAATCTCACAAACCTCATACAGTTGCAGCTGGATACAAATCAGCTGTCAGGTTCAATTCCACCTGGGATTGGAAGCTTGACAAAGCTAACAGTCTTTTTTGCTTGGCAGAACAAACTTGGAAGTGGCATTCCATCATCGTTGGGAGGCTGTAGAAGCCTTGAGGCTTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCCCCAGGCCTGTTTAAACTTCAAAATTTAACAAAGCTTCTGCTAATATCTAATGATATTTCTGGCCCTATTCCTCCTGAGATTGGGAACTGCACTTCCCTCATTCGCCTCCGGCTTGTAGGCAACAGAATCAGTGGGGAGATACCAAGAGAAATCGGCTCTCTTAAGAGCCTTTATTTCCTTGATCTGTCTGAAAATCAGCTGACTGGGTCAGTACCATTTGAGATTGGAAACTGTAAAGAACTGCAAATGCTGAATCTAAGCAACAACTCCCTTTCTGGAGCTTTGCCTAGTTATTTGTCTTCTCTCACAAGGCTAGAGGTCTTGGATGTTTCTATGAATAACTTCTCCGGTGAGGTTCCAATGAGTATTGGCCAACTCACTTCACTTCTTAGACTCATCCTAAGTAGAAACTCTTTCTCTGGGCCAATTCCCTCCTCAATTGGGCAATGTTCAGGTCTTCAGCTGCTAGACCTTAGCAGCAACAATTTTTCAGGGAGCATTCCACCAGAACTGCTTCAAATTGAAGCACTTGATATTTCTCTTAATCTGAGTCACAATGCATTATCTGGAGTGATCCCACCAGAGATTTCTTCTCTGAAAAAGCTGTCAGTTCTAGACCTTTCACACAACAATCTTGAAGGTGACTTGACGGCCTTTTCAGGGCTCGAAAATCTTGTTTCTCTAAACATTTCCTACAACAAAATCACTGGTTATCTTCCAGACACCAAGTTATTCCATCAACTATCAGCAACAGATTTGGCTGGAAACCAAGGTTTGTGTCCTAATGGTCACGATTCTTGTTTTGTTAGCAGTGAGGCTATGACAAAAATGCTGAATGGTACTAATTCTAAAAGGTCAGAGATAATCAAACTGGCTATTGGGCTGCTCAGTGCCTTGATTGTTGCAATGACAGTCTTTGGAGTTGTTACTGTCTTTCGAGCAAGGAAAATCATTCAAGCAGACAATGATTCTGAGATGGGAGGAGATTCATGGCCTTGGCAGTTCACCCCATTCCAAAAGGTAAACTTCTCTGTGGAGCAAGTCTTAAAGTGTTTGGTGGAATCCAATGTAATTGGAAAGGGGTGCTCAGGGATTGTTTATCGTGCCGAAATGGAAAATGGGGATATCATTGCTGTGAAAAGACTATGGCCAACAACAATAGCTGCAAAATGTGATGATCAAAGCGACAAGTTAGCAGTTAATGGAGGGGTACGTGATTCCTTTTCAGCTGAGGTAAAAACTCTCGGTTCAATTCGGCACAAGAACATTGTAAGGTTCTTGGGTTGCTGTTGGAACAGAAAGACAAGGTTGCTTATGTATGATTACATGCCAAATGGGAGTCTAGGAAGTCTGCTTCATGAACGAAGTGGAAACTGCTTGGAATGGGACATAAGGTTTCGGATAATACTAGGAGCAGCACAAGGTGTGGCTTATTTGCACCATGATTGTGCTCCTCCTATTGTTCATAGGGACATCAAGGCCAACAACATTCTCATAGGCCCTGAATTTGAACCATACATAGCTGATTTTGGGCTTGCAAAACTTGTTGATGATGGAGATTTTGCTCGATCTTCTAGCACACTAGCTGGTTCCTATGGTTACATTGCTCCTGGTGGAGTTGAAGTGGTGGATGAAAGCTTGAGAGCTCGGCCAGAATCCGAAATTGAGGAAATGTTGCAGACCTTAGGAGTGGCTTTGCTGTGTGTGAACTCAAGCCCAGATGACAGACCAACCATGAAAGATGTTGTAGCAATGATGAAGGAAATTAGGCAGGACAGAGAGGAATGTGTTAAAGTTGACTTGCTTCTTCATGCATCTTCTGCAAATGATCAACAAGAAAGAAATATTTCAAATAGCCAACATAGCAATGAGGCTAGGCAACTAGGATTTTCTTAG 2451 0.4223 MLQTLSIYSTMLSGEIPPEIGNCSELVNLFFYENDLSGSLPREIGMLQKLEKILLWQNNFVGDIPEEIGNCRNLKILDVSLNSLSGGIPQSLGKLSNLEELMLSNNNISGSIPPALSNLTNLIQLQLDTNQLSGSIPPGIGSLTKLTVFFAWQNKLGSGIPSSLGGCRSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPPEIGNCTSLIRLRLVGNRISGEIPREIGSLKSLYFLDLSENQLTGSVPFEIGNCKELQMLNLSNNSLSGALPSYLSSLTRLEVLDVSMNNFSGEVPMSIGQLTSLLRLILSRNSFSGPIPSSIGQCSGLQLLDLSSNNFSGSIPPELLQIEALDISLNLSHNALSGVIPPEISSLKKLSVLDLSHNNLEGDLTAFSGLENLVSLNISYNKITGYLPDTKLFHQLSATDLAGNQGLCPNGHDSCFVSSEAMTKMLNGTNSKRSEIIKLAIGLLSALIVAMTVFGVVTVFRARKIIQADNDSEMGGDSWPWQFTPFQKVNFSVEQVLKCLVESNVIGKGCSGIVYRAEMENGDIIAVKRLWPTTIAAKCDDQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRKTRLLMYDYMPNGSLGSLLHERSGNCLEWDIRFRIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPGGVEVVDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQDREECVKVDLLLHASSANDQQERNISNSQHSNEARQLGFS 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01198 816 PRINTS Leucine-rich repeat signature 384 397 - -
Vian2g01198 816 PRINTS Leucine-rich repeat signature 242 255 - -
Vian2g01198 816 SUPERFAMILY L domain-like 156 473 - -
Vian2g01198 816 SMART LRR_sd22_2 95 121 - -
Vian2g01198 816 SMART LRR_sd22_2 143 175 - -
Vian2g01198 816 SMART LRR_sd22_2 384 409 - -
Vian2g01198 816 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 43 151 - -
Vian2g01198 816 SMART LRR_typ_2 95 118 IPR003591 -
Vian2g01198 816 SMART LRR_typ_2 167 191 IPR003591 -
Vian2g01198 816 SMART LRR_typ_2 384 406 IPR003591 -
Vian2g01198 816 SMART LRR_typ_2 239 263 IPR003591 -
Vian2g01198 816 SMART LRR_typ_2 311 335 IPR003591 -
Vian2g01198 816 SMART LRR_typ_2 119 143 IPR003591 -
Vian2g01198 816 SMART LRR_typ_2 47 71 IPR003591 -
Vian2g01198 816 SMART LRR_typ_2 407 432 IPR003591 -
Vian2g01198 816 ProSiteProfiles Protein kinase domain profile. 537 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01198 816 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 520 627 - -
Vian2g01198 816 ProSitePatterns Protein kinases ATP-binding region signature. 543 575 IPR017441 GO:0005524
Vian2g01198 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 672 684 IPR008271 GO:0004672|GO:0006468
Vian2g01198 816 ProSiteProfiles Leucine-rich repeat profile. 97 120 IPR001611 GO:0005515
Vian2g01198 816 SUPERFAMILY L domain-like 2 234 - -
Vian2g01198 816 Pfam Leucine Rich repeat 167 182 IPR001611 GO:0005515
Vian2g01198 816 Gene3D Ribonuclease Inhibitor 87 182 IPR032675 -
Vian2g01198 816 Gene3D Ribonuclease Inhibitor 1 86 IPR032675 -
Vian2g01198 816 SMART serkin_6 537 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01198 816 Gene3D Transferase(Phosphotransferase) domain 1 628 725 - -
Vian2g01198 816 Gene3D Transferase(Phosphotransferase) domain 1 726 792 - -
Vian2g01198 816 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 169 456 - -
Vian2g01198 816 ProSiteProfiles Leucine-rich repeat profile. 386 408 IPR001611 GO:0005515
Vian2g01198 816 Gene3D Ribonuclease Inhibitor 183 279 IPR032675 -
Vian2g01198 816 Gene3D Ribonuclease Inhibitor 280 364 IPR032675 -
Vian2g01198 816 Gene3D Ribonuclease Inhibitor 365 452 IPR032675 -
Vian2g01198 816 MobiDBLite consensus disorder prediction 795 816 - -
Vian2g01198 816 Pfam Protein kinase domain 539 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01198 816 PANTHER OS05G0588300 PROTEIN 2 115 - -
Vian2g01198 816 Pfam Leucine rich repeat 72 132 IPR001611 GO:0005515
Vian2g01198 816 FunFam Os07g0541700 protein 628 716 - -
Vian2g01198 816 SUPERFAMILY Protein kinase-like (PK-like) 520 771 IPR011009 -
Vian2g01198 816 Gene3D Phosphorylase Kinase; domain 1 521 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01198 Vian-Chr2 24197667 24200439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01198 2 780 Receptor kinase-like Gene Family AT5G56040 45.863 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian2g01198 Pkinase 2.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01198 - - gmx:100815339 1409.05