Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01195 ATGTCCTTGTTGTTCTTCCTCTTCTTTTGCTTCTGCAAAGCCAGTACTACCACCACAAAGTCATTGTCCCCTTCACCATCCACTTCCTCTGATGTTGAACTTCTCTTGGGAAAAATCAAAGCTTCACTGCAAGGTAACTCTGACAACCTTGTTTTGTCGTCATGGAACTCCTCTATCCCACTTTGTCAGTGGAGAGGTCTCAAGTGGGTGTTCTCCAGTGGCACTCCTCTTTCATGCACTGACTTGTCTTCTCCACAATCTACCAACCTTACACTCCACAAGGACCCTTCTCTTCACTTGCTTTCTCTTCAGCTCCCATCAGCAAATCTCTCTGGTTCCCTCCCCAGAGAGCTCGGGGGGTTCCCTATGCTTCAAAGTCTTTACCTTAACATAAATTCATTGCAGGGAGCCATCCCTCTTGAGCTTGGCTACAGCTCCTCCCTCTCTGACATTGATTTGAGTGACAATATGCTAAGTGGGGTTCTTCCTCCGTCCATTTGGAACTTGTGTGACAGGCTTGTTTCCATTAGGCTCCATGGTAATTCACTATCTGGGTCTGTTTCTGAGCCTGCATTGCCCAACTCATCCTGCAAGAATTTGCAGTTGCTTGATTTAGGAGGCAATAAGTTTTCCGGGAGTTTCCCTGAGTTCATAACAAAGTTTGGTGGGCTAAATCAGCTTGACTTGGGGAACAACTTGTTCATGGGTACAATTCCTCAAAGCCTTGCTGGGCTAAAGCTTGAAAAATTGAATCTTTCCCACAATAACTTCAGTGGGGTTTTGCCTTTCTTTGGAGAATCCAAGTTTGGTGTGGATGCTTTTGAGGGGAATAGCCCTGGTTTATGTGGACCACCTTTGGCAAGCTGTGCTAGGACCTCAACACTGAGTTCTGGTGCAGTTGCTGGCATTGTTATTAGTCTGATGACGGGAGCTGTGGTTTTAGCCTCTTTGCTGATTGGGTATATGCAGAACAAGAAGAGGAAGGGGAGTGGAGAGAGTGAAGATGAGTTGAATGAGGAAGAGGAAGATGAAGAGAATGGTGGTAATGCTATATGTGGAGCTGGTGAAGGGAAGCTTATGTTGTTCCCTGGAGGTGAGAATTTGACATTGGATGATGTGTTAAATGCAACTGGGCAAGTGTTGGAGAAGACTTGTTATGGGACAGCTTATAAGGCTAAGCTTGCTGATGGAGGCACAATTGCTTTGAGATTGTTGCGAGAAGGTAGCTGCAAAGATAGGGCTTCATGTTTGTCAGTTATAAAGCAATTGGGAAAAATTCGCCATGAGAATTTGATTCCTTTGAGAGCTTTCTATCAGGGGAAGAGAGGGGAGAAGCTCCTTATCTATGACTATCTGCCTCTCAGAACCCTTCATGATCTTTTACATGAACCTAAAGCCGGAAAACCAGTACTGAACTGGGCCAGACGACACAAGATTGCATTAGGCATAGCGAGAGGTCTAGCCTATCTTCACACAGGACTAGAAGTTCCTATCACTCATGCAAATGTAAGGTCGAAGAATGTGCTTGTGGATGACTTCTTTGCAGCAAGGCTAACTGATTTTGGCCTGGACAAGCTGATGATTCCTTCCATAGCAGACGAAATGGTGGCGCAGGCCAAGACCGACGGCTACAAGGCTCCGGAGCTTCAAAGAATGAAGAAATGCAGCTCGAGGACGGATGTCTATGCTTTTGGCATACTACTGCTTGAAATCTTGATTGGGAAGAAGCCTGGGAAGAATGGAAGAAGTGGTGAGTATGTGGACTTGCCCTCAATGGTGAAGGTGGCAGTTTTGGAGGAGACAACAATGGAAGTGTTTGATGTGGAACTGTTGAAAGGGATAAGAAGTCCTATGGAAGATGGGTTGGTGCAGGCATTGAAGCTGGCAATGGGGTGCTGTGCACCTGTGGCATCTGTGAGGCCAAGCATGGATGAAGTTGTGAGGCAGTTGGAAGAGAATAGACCAAGGAACAGGTCTGCATTATACAGCCCTACAGAAACAAGAAGTGGCAGTGTTACACCATTTTGA 2028 0.4606 MSLLFFLFFCFCKASTTTTKSLSPSPSTSSDVELLLGKIKASLQGNSDNLVLSSWNSSIPLCQWRGLKWVFSSGTPLSCTDLSSPQSTNLTLHKDPSLHLLSLQLPSANLSGSLPRELGGFPMLQSLYLNINSLQGAIPLELGYSSSLSDIDLSDNMLSGVLPPSIWNLCDRLVSIRLHGNSLSGSVSEPALPNSSCKNLQLLDLGGNKFSGSFPEFITKFGGLNQLDLGNNLFMGTIPQSLAGLKLEKLNLSHNNFSGVLPFFGESKFGVDAFEGNSPGLCGPPLASCARTSTLSSGAVAGIVISLMTGAVVLASLLIGYMQNKKRKGSGESEDELNEEEEDEENGGNAICGAGEGKLMLFPGGENLTLDDVLNATGQVLEKTCYGTAYKAKLADGGTIALRLLREGSCKDRASCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHDLLHEPKAGKPVLNWARRHKIALGIARGLAYLHTGLEVPITHANVRSKNVLVDDFFAARLTDFGLDKLMIPSIADEMVAQAKTDGYKAPELQRMKKCSSRTDVYAFGILLLEILIGKKPGKNGRSGEYVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMDEVVRQLEENRPRNRSALYSPTETRSGSVTPF 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01195 675 FunFam Leucine-rich repeat receptor-like protein kinase 197 289 - -
Vian2g01195 675 Gene3D Transferase(Phosphotransferase) domain 1 453 667 - -
Vian2g01195 675 MobiDBLite consensus disorder prediction 656 675 - -
Vian2g01195 675 Pfam Protein tyrosine and serine/threonine kinase 379 650 IPR001245 GO:0004672|GO:0006468
Vian2g01195 675 Pfam Leucine rich repeat 199 257 IPR001611 GO:0005515
Vian2g01195 675 Gene3D Ribonuclease Inhibitor 193 291 IPR032675 -
Vian2g01195 675 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Vian2g01195 675 Pfam Leucine rich repeat N-terminal domain 36 66 IPR013210 -
Vian2g01195 675 ProSiteProfiles Protein kinase domain profile. 375 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01195 675 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 654 IPR046959 -
Vian2g01195 675 MobiDBLite consensus disorder prediction 654 675 - -
Vian2g01195 675 SUPERFAMILY Protein kinase-like (PK-like) 379 651 IPR011009 -
Vian2g01195 675 Gene3D Phosphorylase Kinase; domain 1 364 451 - -
Vian2g01195 675 MobiDBLite consensus disorder prediction 327 349 - -
Vian2g01195 675 SUPERFAMILY L domain-like 94 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01195 Vian-Chr2 24149351 24152119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01195 3 675 Receptor kinase-like Gene Family AT3G24660 74.184 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian2g01195 PK_Tyr_Ser-Thr 5.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01195 - - gmx:100814814 1181.01