Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01190 ATGTACGTGCCTTGCTATTTAAACCCCTCTTCCTCACCTCCTTCTCTGGCTCCACCCTTTTTCTCTCCTCCTCCCTCTCACAACGTTAACAACCAACACCAAGCTACAACAACAACAAGGAACAGTACTTTGTGTTGGGAGAATCTTCCAAACCCACGCAGAAGAGCAATGGAGTCATTGTCTCTCAGACTCTTCACTCTCACCGTTCTGCTTGCGGTGTTGTTTTCTGCTGCCTCCAACGCAGTCAATGAAAGTGAGATCACCAAACACAAGGCCACAGAATCAAGGGATGTGGTTGAGGAAAAGAAGTTGCGTAGTCAGAGCTTGAAGAATTCGTCTATGGCAGAAAGCTCGGAAGTGAACCAACCTGAGCCGTGGATTAATTCTGTTAAGGATTTGGAGGATGCTTTGAATGAACATGCAATTGATAATCCAGAGGAGATTGCTTCTATGGTTGATGACTCCCATTCCTACATCTTCCAACAGGGTAGGGTAATGCACATGAATGATGTTTCTCACTCCAGCCTGTCTGCAAGAAATAGCTCCAAAATGCAGATCAGATCTGTTTCCACCGTCATGCTTCTGGGTCACAGTGACTCTTATGTCCGCGACAAGCAGATGCAAGTGACCATTGCTTACAACCATTTTGGGGAGGGACTTATCCAAAGGATGCCCAGATACCTTGCTCCTTTGAACCCTTTTGCCAAAGAGGTAACAAAGAGAGTAGACACGGGTGCATCCGTATGGAAAAGTTGGAATTGGAGGTCTGAAGGAGACCTTTTGCTGAATGGAGCCTATTTCACCTCTTCGGGAGCAGGAGCTGCAGCGAGCTATGCTAGAGCCTCAAGTTTGGGGGCGAAATCATCTTCTTTGGTTGGTACCCTTACCTCTGGAGCTGGTGTTCTTAACTGTCGCAGGGGTAACATGTGTTAA 933 0.4695 MYVPCYLNPSSSPPSLAPPFFSPPPSHNVNNQHQATTTTRNSTLCWENLPNPRRRAMESLSLRLFTLTVLLAVLFSAASNAVNESEITKHKATESRDVVEEKKLRSQSLKNSSMAESSEVNQPEPWINSVKDLEDALNEHAIDNPEEIASMVDDSHSYIFQQGRVMHMNDVSHSSLSARNSSKMQIRSVSTVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRYLAPLNPFAKEVTKRVDTGASVWKSWNWRSEGDLLLNGAYFTSSGAGAAASYARASSLGAKSSSLVGTLTSGAGVLNCRRGNMC 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01190 310 PRINTS Pollen allergen Amb family signature 252 276 IPR018082 -
Vian2g01190 310 PRINTS Pollen allergen Amb family signature 281 304 IPR018082 -
Vian2g01190 310 MobiDBLite consensus disorder prediction 84 123 - -
Vian2g01190 310 MobiDBLite consensus disorder prediction 11 25 - -
Vian2g01190 310 MobiDBLite consensus disorder prediction 87 107 - -
Vian2g01190 310 MobiDBLite consensus disorder prediction 26 41 - -
Vian2g01190 310 Gene3D - 155 303 IPR012334 -
Vian2g01190 310 SUPERFAMILY Pectin lyase-like 186 309 IPR011050 -
Vian2g01190 310 PANTHER PECTATE LYASE 18-RELATED 226 308 IPR045032 GO:0030570
Vian2g01190 310 MobiDBLite consensus disorder prediction 108 123 - -
Vian2g01190 310 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01190 Vian-Chr2 24005504 24011153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01190 192 310 Polysaccharide Lyase AT4G13710 59.091 5.82e-53 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01190 K01728 - gmx:100809277 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01190 2 24005504 24011153 Vian2g01190 2 24005504 24011153 ECH