Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01189 ATGGTGGTTATAGAACAGGAAGAGAGCGAGCACCGAAATGCGAGCCGCTCCAACGCTGCCGGCGCTGCCAACGACGCTTCCGATGGCTTCGAAACCGCCAGCGAGGCCGATCTCGCCAGTGATGATGACGGCGGAGATGGTGGAGCAGACAGAGAACAGGAGCAGAATCACCCCGAGGAACACCACCGGCAGCAGCAGACTGAGCAACAACCTGAACGCGATGTTCCTCAGAGCACCGCCGAATCCTCTGAGAATGCCTTGATCACTGAAGAGTCCCCCGAGAATGCGTTGATCAACGAAGAAGAATCTAGACAGAAAGCATTGGATCAAGCAAATGAAGCAAAGGTTGAAGGCAACAAACTTTTTGTAGATGGGAAGTATGAAGAGGCGTTATCACAGTATGAAGTTGCTTTACAAGTAGCACCAGACACACCTTCATCTGTGGAAATACGGTCAATATGCCACTCGAACCGTGGTGTGTGCTTTCTGAAACTGGGAAAATATGATAACACAATCAAGGAATGCACAAAAGCATTAGAACTGAATCCTGTGTACGTTAAGGCTTTCGTGAGAAGAGGAGAAGCTCATGAAAAGCTCGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAAGTATTCGGCGCCTAGAGCCCCTTGCTGCAGAAAAACGGGAAAAAATGAAGGAGGAAATGATTGGAAAATTGAAAGATATGGGCAATTCTGTCCTGGGCCGCTTTGGGATGAGTGTGGACAACTTTAAAGCCGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAACGCTAA 852 0.473 MVVIEQEESEHRNASRSNAAGAANDASDGFETASEADLASDDDGGDGGADREQEQNHPEEHHRQQQTEQQPERDVPQSTAESSENALITEESPENALINEEESRQKALDQANEAKVEGNKLFVDGKYEEALSQYEVALQVAPDTPSSVEIRSICHSNRGVCFLKLGKYDNTIKECTKALELNPVYVKAFVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKSIRRLEPLAAEKREKMKEEMIGKLKDMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01189 283 MobiDBLite consensus disorder prediction 97 113 - -
Vian2g01189 283 Coils Coil 97 117 - -
Vian2g01189 283 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 1 283 - -
Vian2g01189 283 Pfam Tetratricopeptide repeat 154 183 IPR001440 GO:0005515
Vian2g01189 283 MobiDBLite consensus disorder prediction 1 113 - -
Vian2g01189 283 MobiDBLite consensus disorder prediction 70 92 - -
Vian2g01189 283 Pfam Tetratricopeptide repeat 187 219 IPR013105 -
Vian2g01189 283 ProSiteProfiles TPR repeat profile. 111 144 IPR019734 GO:0005515
Vian2g01189 283 MobiDBLite consensus disorder prediction 44 69 - -
Vian2g01189 283 ProSiteProfiles TPR repeat profile. 152 185 IPR019734 GO:0005515
Vian2g01189 283 SUPERFAMILY TPR-like 107 230 IPR011990 GO:0005515
Vian2g01189 283 Gene3D Tetratricopeptide repeat domain 50 247 IPR011990 GO:0005515
Vian2g01189 283 ProSiteProfiles TPR repeat profile. 186 219 IPR019734 GO:0005515
Vian2g01189 283 SMART tpr_5 186 219 IPR019734 GO:0005515
Vian2g01189 283 SMART tpr_5 152 185 IPR019734 GO:0005515
Vian2g01189 283 SMART tpr_5 111 144 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01189 Vian-Chr2 23948915 23955392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01189 58 242 Calmodulin-binding Proteins AT3G25230 34.197 3.71e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01189 K24926 - gmx:100808386 395.201