Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01187 ATGGCGTGGCAAGAGCTTATGCAGAAGACCTTGGGCATTTGCAATCAACCTCACACAATAAAGTACCAGCTTCCAGGAGAGGATCTTGATGCTCTAATATCTGTTTCCTCTGATGAAGATCTTCAAAATATGAAAGAGGAATACCATGGGCTTGAAAGGCATGAACGTTCTCAAAAACTTAGAATTTTTTTAGTTCCTTTGGGTGAATCCGAAGAGACATCATCAACAGAGGTGAATGCTGTTCAACAGAATGATCCTGATTACCAATATGTTGTTGCTGTAAATGGTATGGGAGACTCTACTATAACAAACATCGGTGGGCAAAATTTGACAAATGCATCCAGTCAGTTGGGGGCAGATTTGAACTTTACTCCAGTTCTTCCAAAAACTCCAAATGCTTCTCCAGATGGTCTTTTTAATGATTCCCTGAATGTGAAAAGGCCCTTGTCAATTCCTCCCGCTCCAATTCCGATATCAGGTTCTAACACAGGTTATATACAATTACTGGGTGACCACTCATGTCAGGGAAGCATTGAGAGCAATGCATCATATGCTCAGCTATATCCTGAGTGCTCTAATATCAGCACTGCTGGTTGCATATATCCTCAGCACGTGAGTGACACTTGTCCTTATCAGCATGGTGATGTTATTCAGCCCAAGAAGCTCAATGGAGGTCCTAGCAAGGAATTAGTGACTCCTGTTTATGTTAATCCCAGAGATGAATTTTTTGGTGGAAGGTCCTTGCAAAGGGAAAGGGTCTTCTCTAAAACTCCCCTTTCATTGTTGGATGATGTAATTTGTCGACAGGGTGAATCTTATGGAATTACAGACTCCCCTCATGGGATGCCCCATGCCTTTTCTGATCCACAGTTGCTACGAAGTGGAGCAAAGTCTGGTTACTGCTCCCAAAATGGAAATGGTCAATCTTTCTCCCTGAACCTTGAAAAGGGTCAAATATCTTCATTGTTAATCCCTAGTGTCTCACGGGTGAAAGTCACGGAGCATCCGCATGATTCTTTTGTCCATCATCCTCAAATACAAAGTACGACACCAGAAGGAGAGTCAGCCCAGGCACCCAAAAGGCAAGATTTGACATCTTCTCCATACTATGAATCCATGGGAATGAATAATCTTGTTCACATGGATAACACATTAGCTGAAAAAAAGAACTCAATTGCTCAAACTGACTTGGGTATACACAGCTACGATGCAAAGGATGTTCAGGAAAATTCTGTGAATTTAGAAAGGATGAAGATAGTTGAACAAAAGAATTTTATTCCCAAGGATAGCAAGGTTCAGCAGGGGAAATCAACTGCCATTGACAAGGGATTTGTGACTGAGTTTCATCTCTTGAACTCCTTCCCTGCTAATAACTTAAATGCTAATATTAATATGCAAAAGAATTGGGATCTACCTTTTGAGGGTATTGTCCCTATTCCATCAGACACGATGGATCTCTCCTCAAATAATTTTTTGGAAAAGACCATATGTGATTCTAACATGAGCCAAAGGACTAGTGAGCACAAAATCAACGCTTTGGCTAAAGGTCTGAATGGTGTACAAGGGTTTGATTTTTCATTGACCAGAAATTTTGAATTAAATGCTCCAATATTAAATTCTGAAGTAGGTTCCAGTGATAAAAGTTCCCGAGGAGGTTATACTAATAAGCTGTCCATTCATCCAGCTTCTCATAAAGCTGCACAAATCCATCCTTCGAAGAATCAGATGGATGTAGCTTTTGAAGAAAATCCTACAGCAAGCTATGGAAGTTTGTATCCTGCTGCATTTTGTGATGATCTTGGTCCAAGTGTAAACATGCCTATGAATGGCCCTGATAATTCAGGCACTATTATGTCACTTAAAAAGGCACCACCTTTCCTTGATGACTTCATTACCAGCACTGGTCAAGTGGTGGATCAGTTTATCCCCAAACAGTCTGCCTCTGGAATGTCAAATGTTGAAGATAAAGTTTCAGAACAACAAAAAATTTTAGAAGGCTACACTGATGTGAATCAAGTGGAGACGTTCAATGTAACAGACATGACTCGTGTTGTTAGTCCTTATATTTCTAGTGATATTGGAAGTGTTGTATCCCTATCTCATACAGAAGTTGGGAGCATCATCCCTGGGTTTGAGCCTGAGGATTTTAATGAAGACAAAAATGAATTCTTTTCTGATGCAATGATAGCAGAAATGGAGGCTAGCATTTATGGTTTACAGATAATAAGGAATGCTGATCTTGAAGAACTTACAGAGTTGGGTTCTGGTACTTATGGCACTGTTTATCATGGAAAATGGCGGGGAACAGATATTGCTATAAAGAGAATTAAAAAGAGTTGCTTTGTTGGAAGGTCTTCTGAGCAAGAACGGTTGGCAAAAGATTTTTGGAGAGAAGCACAAATCCTTTCAAATCTTCATCATCCCAATGTGGTTGCATTTTATGGAATAGTACCGGATGGGGCGGAAGGAACCTTAGCAACTGTAACAGAATACATGGTTAATGGTTCCCTTAGGCATGTCCTTGTAAAGAACAATAGATTACTTGATCGCCGTAAAAAGCTAATAATTGCCATGGATGCCGCTTTCGGTATGGAATATTTGCACTCAAAAAATATTGTCCATTTTGATTTGAAATGTGACAATTTGCTTGTGAATCTAAGGGATCCACAACGACCAATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGCAATACCCTTGTATCTGGAGGTGTGCGAGGAACCCTTCCATGGATGGCACCGGAGCTGTTGAATGGGAATAGCAGTCGTGTTTCTGAAAAGGTTGACGTTTTCTCATTTGGCATCTCAATGTGGGAGTTATTAACAGGAGAGGAACCTTATGCAGATATGCATTGTGGCGCCATTATTGGGGGTATTGTAAAGAACACTCTGAGGCCTCCTGTGCCTGAACGGTGTGATTCTGAATGGAGGAAGCTTATGGAAGAGTGTTGGTCACCTGACCCTGAAAGCCGGCCATCATTCACAGAGATAACCAGCAGGTTAAGATCCATGTCTCTACTCCTTCAAACAAAAGGGTTAAGACCCTTCTGA 3078 0.4074 MAWQELMQKTLGICNQPHTIKYQLPGEDLDALISVSSDEDLQNMKEEYHGLERHERSQKLRIFLVPLGESEETSSTEVNAVQQNDPDYQYVVAVNGMGDSTITNIGGQNLTNASSQLGADLNFTPVLPKTPNASPDGLFNDSLNVKRPLSIPPAPIPISGSNTGYIQLLGDHSCQGSIESNASYAQLYPECSNISTAGCIYPQHVSDTCPYQHGDVIQPKKLNGGPSKELVTPVYVNPRDEFFGGRSLQRERVFSKTPLSLLDDVICRQGESYGITDSPHGMPHAFSDPQLLRSGAKSGYCSQNGNGQSFSLNLEKGQISSLLIPSVSRVKVTEHPHDSFVHHPQIQSTTPEGESAQAPKRQDLTSSPYYESMGMNNLVHMDNTLAEKKNSIAQTDLGIHSYDAKDVQENSVNLERMKIVEQKNFIPKDSKVQQGKSTAIDKGFVTEFHLLNSFPANNLNANINMQKNWDLPFEGIVPIPSDTMDLSSNNFLEKTICDSNMSQRTSEHKINALAKGLNGVQGFDFSLTRNFELNAPILNSEVGSSDKSSRGGYTNKLSIHPASHKAAQIHPSKNQMDVAFEENPTASYGSLYPAAFCDDLGPSVNMPMNGPDNSGTIMSLKKAPPFLDDFITSTGQVVDQFIPKQSASGMSNVEDKVSEQQKILEGYTDVNQVETFNVTDMTRVVSPYISSDIGSVVSLSHTEVGSIIPGFEPEDFNEDKNEFFSDAMIAEMEASIYGLQIIRNADLEELTELGSGTYGTVYHGKWRGTDIAIKRIKKSCFVGRSSEQERLAKDFWREAQILSNLHHPNVVAFYGIVPDGAEGTLATVTEYMVNGSLRHVLVKNNRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPVPERCDSEWRKLMEECWSPDPESRPSFTEITSRLRSMSLLLQTKGLRPF 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01187 1025 ProSitePatterns Protein kinases ATP-binding region signature. 753 778 IPR017441 GO:0005524
Vian2g01187 1025 Gene3D - 1 66 - -
Vian2g01187 1025 SMART serkin_6 747 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01187 1025 MobiDBLite consensus disorder prediction 339 362 - -
Vian2g01187 1025 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 740 834 - -
Vian2g01187 1025 Pfam Protein tyrosine and serine/threonine kinase 749 1010 IPR001245 GO:0004672|GO:0006468
Vian2g01187 1025 ProSiteProfiles Protein kinase domain profile. 747 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01187 1025 PANTHER SERINE-THREONINE PROTEIN KINASE 10 1012 - -
Vian2g01187 1025 SUPERFAMILY Protein kinase-like (PK-like) 735 1009 IPR011009 -
Vian2g01187 1025 Gene3D Phosphorylase Kinase; domain 1 740 834 - -
Vian2g01187 1025 Pfam PB1 domain 3 66 IPR000270 GO:0005515
Vian2g01187 1025 PRINTS Tyrosine kinase catalytic domain signature 981 1003 IPR001245 GO:0004672|GO:0006468
Vian2g01187 1025 PRINTS Tyrosine kinase catalytic domain signature 937 959 IPR001245 GO:0004672|GO:0006468
Vian2g01187 1025 PRINTS Tyrosine kinase catalytic domain signature 829 842 IPR001245 GO:0004672|GO:0006468
Vian2g01187 1025 PRINTS Tyrosine kinase catalytic domain signature 866 884 IPR001245 GO:0004672|GO:0006468
Vian2g01187 1025 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 835 1023 - -
Vian2g01187 1025 SUPERFAMILY CAD & PB1 domains 2 71 - -
Vian2g01187 1025 Gene3D Transferase(Phosphotransferase) domain 1 835 1020 - -
Vian2g01187 1025 SMART PB1_new 3 67 IPR000270 GO:0005515
Vian2g01187 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 872 884 IPR008271 GO:0004672|GO:0006468
Vian2g01187 1025 MobiDBLite consensus disorder prediction 342 362 - -
Vian2g01187 1025 CDD STKc_MAP3K-like 753 1010 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01187 Vian-Chr2 23910728 23925116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01187 1 122 MAP Kinase Kinase Kinase AT1G16270 45.968 1.16e-20 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vian2g01187 PK_Tyr_Ser-Thr 5.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01187 - - pvu:PHAVU_008G122700g 1640.94