Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01166 ATGAAGCCTACTATGGCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTAATGAAAAGAAAATTGCATGCCACTGCAAAAGCTTTTGTCGCAGAAGGAAAGGTTGCCACGGATCCAGTAGCTATTGATGCACCTGGAGGATTCCTTTATGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACACAGCAAACAAAAGTTAGAGAACACCAACAACTTCAAATACAGCAGATGCAGCTAATGCAGCAACGCAATGCACAATTACAGCGAAGAGATCCTAATCATCCTGCTCTTGGTAGTTCCATAAATGCTATGAACTCTGAAGGAATGTTGGGACAGCAACCAGCAAGTGTGTTGGCAATGAAAATGTATGAAGATCGAATGAAACACCCCCAACCAATGGATTCAGAGGCATCTCCAACTCTTATTGATGCTAATAGGATGGCCTTACTCAAATCAGCAGCTAGTCATCAAGGCCAATTGGTTCATGGAAATTCAGGGAATATGTCAACTGCATTGCACCAAATTCCTGGGCGAACTCCTTTGACCACTGACATAAAAACAGAAGTTAATTTAGGGGCCCCTCCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCAGGGCTAGGGAGTGCAGGATTAAATCAAGGTGTTACAGGTCTTCCATTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAGGCCTAATTTGGGTGTACAAGTTCCGAAGCCCAATTTGACAACCCAGAACCAATTTGTCATGTCATCACAACAGCAACAGGTCTTGACTCAGAATAACCTTGGAAATTCTAGTTATGGTGACATGGATCCTCGTAGGCTTTCTGGTCTTCCTCGAGGTAGCTTGAGTGCAAAGGATGGTCAATCTACCAGGAACGATGGATCTATTTGCTCCCAAATGCAGTCTGATTCACCTAAGCAGATGAAGATGGCCCAGTCACAACATTCATTATCTCAACAACAGGAGCAATTACAGCAGCATCAACTGCAGCAGAATAACAGAAAAAGAAAACAGCATTCTGGAGCTGCCAATAGCACTGGCACTGGTAACACTGCTGTTCCTTCACCTAATTCACCACCATCAACTCATACACCTGGTGATGGATTAAATACAGCAAACAACATGCAGCATGTTAACAATGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCCTCCAATTTACTGGAGGACATGGAACGATTTGGAGATGTTGATGCCTTAGATGATAATGTAGAATCCTTTCTATCAAATGATGGTGGAGATGGTGGAAATCTCTATGGAGCAGTGAAACAAAGCCCAGCTGAGCAACAGAAAGAGTCTTCAAAAGGTTTCACCTTTGCAGAAGTTAGTAGCATAAGATCGAGGAACAGCAAAGTTACGTGCTGTCACTTTTCTTCAGATGGAAAGTGGCTTGCCAGTGCTGGAGATGACATGAAGGTTGTCTTCTGGAACATGGACACTTTTAAGACAGAGAACAGTCCTGCAGAACACAAAGCAGTTATTACAGATGTCCGTTATAGACCAAATTCACTTCAGGTGGCAACTGCCTCAATGGATAAATGTGTGCGGTTATGGGACACAACAAATCCTAACCGCTGTGTACAAGAATATAGTGGGCACTCTTCACCTATAGTGTCTCTTGATTTCCATCCTAAGAAGACTGAACTTTTCTGCTTCTGCGATGGAGAAAATGAAATTCGGTATTGGAATATTAATTCTCCCAACAGCATGCGAGCAACTAAGGGAGGTAATACACAAGTGAGGTTTCAGCCTAGACTGGGGCATTTACTAGCAGCAGGTTCTGATAAAGGAGTGTCAATTTTTGATGTTGAATCTGACACAAAAATCTACTCCCTGCAGGGTCATCCTGATCCAGTGAGCTATATTTGCTGGGATGGAAATGGTGAAGCCTTGGCATCTGTGAGTCTTAATATGGTAAAGATTTGGAGTTTGAACTCAGGAGAATGCATTCAAGAGATCAGCTCTACCGGAAGCGGATTTCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTGATTGGAGGATTTTCGTGCTTAGAGTTATGGAACATGAGCGAGAACAAAAGCATGACAATTCCTGCACATGAAAATGTAATATCTAGCATGGCTCAGTCTTCTGTCACTGGAATGGTTGCATCTGCAAGTTTTGACAACTATGTAAAGGTGTGGAAATAA 2349 0.421 MKPTMAQNQSNWEADKMLDVYIYDYLMKRKLHATAKAFVAEGKVATDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKVREHQQLQIQQMQLMQQRNAQLQRRDPNHPALGSSINAMNSEGMLGQQPASVLAMKMYEDRMKHPQPMDSEASPTLIDANRMALLKSAASHQGQLVHGNSGNMSTALHQIPGRTPLTTDIKTEVNLGAPPKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLASGIDQLRPNLGVQVPKPNLTTQNQFVMSSQQQQVLTQNNLGNSSYGDMDPRRLSGLPRGSLSAKDGQSTRNDGSICSQMQSDSPKQMKMAQSQHSLSQQQEQLQQHQLQQNNRKRKQHSGAANSTGTGNTAVPSPNSPPSTHTPGDGLNTANNMQHVNNVQKSMMMYGTEATGGLASSSNLLEDMERFGDVDALDDNVESFLSNDGGDGGNLYGAVKQSPAEQQKESSKGFTFAEVSSIRSRNSKVTCCHFSSDGKWLASAGDDMKVVFWNMDTFKTENSPAEHKAVITDVRYRPNSLQVATASMDKCVRLWDTTNPNRCVQEYSGHSSPIVSLDFHPKKTELFCFCDGENEIRYWNINSPNSMRATKGGNTQVRFQPRLGHLLAAGSDKGVSIFDVESDTKIYSLQGHPDPVSYICWDGNGEALASVSLNMVKIWSLNSGECIQEISSTGSGFHSCVFHPSYSTLLVIGGFSCLELWNMSENKSMTIPAHENVISSMAQSSVTGMVASASFDNYVKVWK 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01166 782 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Vian2g01166 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 542 IPR001680 GO:0005515
Vian2g01166 782 SMART WD40_4 579 619 IPR001680 GO:0005515
Vian2g01166 782 SMART WD40_4 743 782 IPR001680 GO:0005515
Vian2g01166 782 SMART WD40_4 494 533 IPR001680 GO:0005515
Vian2g01166 782 SMART WD40_4 623 658 IPR001680 GO:0005515
Vian2g01166 782 SMART WD40_4 702 741 IPR001680 GO:0005515
Vian2g01166 782 SMART WD40_4 536 575 IPR001680 GO:0005515
Vian2g01166 782 SMART WD40_4 661 699 IPR001680 GO:0005515
Vian2g01166 782 CDD WD40 497 782 - -
Vian2g01166 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 575 IPR001680 GO:0005515
Vian2g01166 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 750 782 - -
Vian2g01166 782 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 782 IPR044716 GO:0003714
Vian2g01166 782 MobiDBLite consensus disorder prediction 323 415 - -
Vian2g01166 782 MobiDBLite consensus disorder prediction 467 490 - -
Vian2g01166 782 SMART Lish 14 46 IPR006594 GO:0005515
Vian2g01166 782 SUPERFAMILY WD40 repeat-like 492 782 IPR036322 GO:0005515
Vian2g01166 782 Gene3D - 631 782 IPR015943 GO:0005515
Vian2g01166 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 750 782 IPR001680 GO:0005515
Vian2g01166 782 Gene3D - 480 630 IPR015943 GO:0005515
Vian2g01166 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 628 IPR001680 GO:0005515
Vian2g01166 782 Pfam LisH 16 41 IPR006594 GO:0005515
Vian2g01166 782 ProSitePatterns Trp-Asp (WD) repeats signature. 520 534 IPR019775 -
Vian2g01166 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 575 - -
Vian2g01166 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 536 - -
Vian2g01166 782 Coils Coil 351 378 - -
Vian2g01166 782 MobiDBLite consensus disorder prediction 301 415 - -
Vian2g01166 782 Pfam WD domain, G-beta repeat 581 619 IPR001680 GO:0005515
Vian2g01166 782 Pfam WD domain, G-beta repeat 545 575 IPR001680 GO:0005515
Vian2g01166 782 Pfam WD domain, G-beta repeat 506 533 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01166 Vian-Chr2 23125951 23133513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01166 583 781 Miscellaneous Gene Families AT5G08390 25.366 3.88e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vian2g01166 WD40 0.015 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01166 - - gmx:100799686 1291.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01166 2 23125951 23133513 Vian2g01166 2 23125951 23133513 ECH