Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian2g01166 | ATGAAGCCTACTATGGCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTAATGAAAAGAAAATTGCATGCCACTGCAAAAGCTTTTGTCGCAGAAGGAAAGGTTGCCACGGATCCAGTAGCTATTGATGCACCTGGAGGATTCCTTTATGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACACAGCAAACAAAAGTTAGAGAACACCAACAACTTCAAATACAGCAGATGCAGCTAATGCAGCAACGCAATGCACAATTACAGCGAAGAGATCCTAATCATCCTGCTCTTGGTAGTTCCATAAATGCTATGAACTCTGAAGGAATGTTGGGACAGCAACCAGCAAGTGTGTTGGCAATGAAAATGTATGAAGATCGAATGAAACACCCCCAACCAATGGATTCAGAGGCATCTCCAACTCTTATTGATGCTAATAGGATGGCCTTACTCAAATCAGCAGCTAGTCATCAAGGCCAATTGGTTCATGGAAATTCAGGGAATATGTCAACTGCATTGCACCAAATTCCTGGGCGAACTCCTTTGACCACTGACATAAAAACAGAAGTTAATTTAGGGGCCCCTCCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCAGGGCTAGGGAGTGCAGGATTAAATCAAGGTGTTACAGGTCTTCCATTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAGGCCTAATTTGGGTGTACAAGTTCCGAAGCCCAATTTGACAACCCAGAACCAATTTGTCATGTCATCACAACAGCAACAGGTCTTGACTCAGAATAACCTTGGAAATTCTAGTTATGGTGACATGGATCCTCGTAGGCTTTCTGGTCTTCCTCGAGGTAGCTTGAGTGCAAAGGATGGTCAATCTACCAGGAACGATGGATCTATTTGCTCCCAAATGCAGTCTGATTCACCTAAGCAGATGAAGATGGCCCAGTCACAACATTCATTATCTCAACAACAGGAGCAATTACAGCAGCATCAACTGCAGCAGAATAACAGAAAAAGAAAACAGCATTCTGGAGCTGCCAATAGCACTGGCACTGGTAACACTGCTGTTCCTTCACCTAATTCACCACCATCAACTCATACACCTGGTGATGGATTAAATACAGCAAACAACATGCAGCATGTTAACAATGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCCTCCAATTTACTGGAGGACATGGAACGATTTGGAGATGTTGATGCCTTAGATGATAATGTAGAATCCTTTCTATCAAATGATGGTGGAGATGGTGGAAATCTCTATGGAGCAGTGAAACAAAGCCCAGCTGAGCAACAGAAAGAGTCTTCAAAAGGTTTCACCTTTGCAGAAGTTAGTAGCATAAGATCGAGGAACAGCAAAGTTACGTGCTGTCACTTTTCTTCAGATGGAAAGTGGCTTGCCAGTGCTGGAGATGACATGAAGGTTGTCTTCTGGAACATGGACACTTTTAAGACAGAGAACAGTCCTGCAGAACACAAAGCAGTTATTACAGATGTCCGTTATAGACCAAATTCACTTCAGGTGGCAACTGCCTCAATGGATAAATGTGTGCGGTTATGGGACACAACAAATCCTAACCGCTGTGTACAAGAATATAGTGGGCACTCTTCACCTATAGTGTCTCTTGATTTCCATCCTAAGAAGACTGAACTTTTCTGCTTCTGCGATGGAGAAAATGAAATTCGGTATTGGAATATTAATTCTCCCAACAGCATGCGAGCAACTAAGGGAGGTAATACACAAGTGAGGTTTCAGCCTAGACTGGGGCATTTACTAGCAGCAGGTTCTGATAAAGGAGTGTCAATTTTTGATGTTGAATCTGACACAAAAATCTACTCCCTGCAGGGTCATCCTGATCCAGTGAGCTATATTTGCTGGGATGGAAATGGTGAAGCCTTGGCATCTGTGAGTCTTAATATGGTAAAGATTTGGAGTTTGAACTCAGGAGAATGCATTCAAGAGATCAGCTCTACCGGAAGCGGATTTCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTGATTGGAGGATTTTCGTGCTTAGAGTTATGGAACATGAGCGAGAACAAAAGCATGACAATTCCTGCACATGAAAATGTAATATCTAGCATGGCTCAGTCTTCTGTCACTGGAATGGTTGCATCTGCAAGTTTTGACAACTATGTAAAGGTGTGGAAATAA | 2349 | 0.421 | MKPTMAQNQSNWEADKMLDVYIYDYLMKRKLHATAKAFVAEGKVATDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKVREHQQLQIQQMQLMQQRNAQLQRRDPNHPALGSSINAMNSEGMLGQQPASVLAMKMYEDRMKHPQPMDSEASPTLIDANRMALLKSAASHQGQLVHGNSGNMSTALHQIPGRTPLTTDIKTEVNLGAPPKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLASGIDQLRPNLGVQVPKPNLTTQNQFVMSSQQQQVLTQNNLGNSSYGDMDPRRLSGLPRGSLSAKDGQSTRNDGSICSQMQSDSPKQMKMAQSQHSLSQQQEQLQQHQLQQNNRKRKQHSGAANSTGTGNTAVPSPNSPPSTHTPGDGLNTANNMQHVNNVQKSMMMYGTEATGGLASSSNLLEDMERFGDVDALDDNVESFLSNDGGDGGNLYGAVKQSPAEQQKESSKGFTFAEVSSIRSRNSKVTCCHFSSDGKWLASAGDDMKVVFWNMDTFKTENSPAEHKAVITDVRYRPNSLQVATASMDKCVRLWDTTNPNRCVQEYSGHSSPIVSLDFHPKKTELFCFCDGENEIRYWNINSPNSMRATKGGNTQVRFQPRLGHLLAAGSDKGVSIFDVESDTKIYSLQGHPDPVSYICWDGNGEALASVSLNMVKIWSLNSGECIQEISSTGSGFHSCVFHPSYSTLLVIGGFSCLELWNMSENKSMTIPAHENVISSMAQSSVTGMVASASFDNYVKVWK | 782 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian2g01166 | 782 | ProSiteProfiles | LIS1 homology (LisH) motif profile. | 14 | 46 | IPR006594 | GO:0005515 | |
Vian2g01166 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 501 | 542 | IPR001680 | GO:0005515 | |
Vian2g01166 | 782 | SMART | WD40_4 | 579 | 619 | IPR001680 | GO:0005515 | |
Vian2g01166 | 782 | SMART | WD40_4 | 743 | 782 | IPR001680 | GO:0005515 | |
Vian2g01166 | 782 | SMART | WD40_4 | 494 | 533 | IPR001680 | GO:0005515 | |
Vian2g01166 | 782 | SMART | WD40_4 | 623 | 658 | IPR001680 | GO:0005515 | |
Vian2g01166 | 782 | SMART | WD40_4 | 702 | 741 | IPR001680 | GO:0005515 | |
Vian2g01166 | 782 | SMART | WD40_4 | 536 | 575 | IPR001680 | GO:0005515 | |
Vian2g01166 | 782 | SMART | WD40_4 | 661 | 699 | IPR001680 | GO:0005515 | |
Vian2g01166 | 782 | CDD | WD40 | 497 | 782 | - | - | |
Vian2g01166 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 543 | 575 | IPR001680 | GO:0005515 | |
Vian2g01166 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 750 | 782 | - | - | |
Vian2g01166 | 782 | PANTHER | TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 | 5 | 782 | IPR044716 | GO:0003714 | |
Vian2g01166 | 782 | MobiDBLite | consensus disorder prediction | 323 | 415 | - | - | |
Vian2g01166 | 782 | MobiDBLite | consensus disorder prediction | 467 | 490 | - | - | |
Vian2g01166 | 782 | SMART | Lish | 14 | 46 | IPR006594 | GO:0005515 | |
Vian2g01166 | 782 | SUPERFAMILY | WD40 repeat-like | 492 | 782 | IPR036322 | GO:0005515 | |
Vian2g01166 | 782 | Gene3D | - | 631 | 782 | IPR015943 | GO:0005515 | |
Vian2g01166 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 750 | 782 | IPR001680 | GO:0005515 | |
Vian2g01166 | 782 | Gene3D | - | 480 | 630 | IPR015943 | GO:0005515 | |
Vian2g01166 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 586 | 628 | IPR001680 | GO:0005515 | |
Vian2g01166 | 782 | Pfam | LisH | 16 | 41 | IPR006594 | GO:0005515 | |
Vian2g01166 | 782 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 520 | 534 | IPR019775 | - | |
Vian2g01166 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 543 | 575 | - | - | |
Vian2g01166 | 782 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 501 | 536 | - | - | |
Vian2g01166 | 782 | Coils | Coil | 351 | 378 | - | - | |
Vian2g01166 | 782 | MobiDBLite | consensus disorder prediction | 301 | 415 | - | - | |
Vian2g01166 | 782 | Pfam | WD domain, G-beta repeat | 581 | 619 | IPR001680 | GO:0005515 | |
Vian2g01166 | 782 | Pfam | WD domain, G-beta repeat | 545 | 575 | IPR001680 | GO:0005515 | |
Vian2g01166 | 782 | Pfam | WD domain, G-beta repeat | 506 | 533 | IPR001680 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian2g01166 | Vian-Chr2 | 23125951 | 23133513 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian2g01166 | 583 | 781 | Miscellaneous Gene Families | AT5G08390 | 25.366 | 3.88e-12 | 68.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | LUG | Vian2g01166 | WD40 | 0.015 | CL0186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian2g01166 | - | - | gmx:100799686 | 1291.56 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian2g01166 | 2 | 23125951 | 23133513 | Vian2g01166 | 2 | 23125951 | 23133513 | ECH |