Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01157 ATGTCCAAGCACACAATGAATGTGGATGAAGCCAATGACTGTACTGACAATGTTGATGACCGTAATGAAAGTTTATTGGATATGGACCCAACAGTGCAAATGTGTTTTGAATCAATGATTGAAGCTAGAACCTTTTACACAAACTACGCCATTAGATGTGGGTTTGTCGTGCGGACTAGAACTTCTAAAAAAGATAAAGACAACAACGTGTACTACTTGAGATTAGTTTGTTCAAGGGAAGGGAAATATGTGTCTTCCGTCAAACCTGTGGTCAAAACACTTCCAAGTCAAACTAACCAATGTCCTGCTGAGATAACCATTGCAAAGAAGGACGACAAGTGTTTTATAAGAACCGTTGTTCTGGACCACAACCATGATCTTTGCCCGAATAACTCCAACCTTTTTGCAGCGAATAGAAAGTTAAGCATGCAAGAAAAACACACGTTGGAGGTGAACCATGATGCTGGAGTTAGGTTAAATAAGAGTTTCCTTAGCATTGTCAACGATGCCGGGGGCTATGAAAACATGGACTTCGTCGAGCGGGACGCGAGAAACTACATTGTCCAACACAGAAGATCTTTATGTAAGGATGGTGATGGTCAGACACTCCTACGATACTTTTCTTCAATGAAAGATACAAATAACGAGTTCTTCTATGACATTACACTCGATGAAGGGAATAAAATATGTAGTGTGTTTTGGGCTGATGCAAGAAGTCGTGCTGCATGTGAAGAATTTGGTGATGTTGTTTCGTTTGACACAACTTACTTAACAAATAAGTACGACATGCCATTTGCACCTTTTGTGGGAGTTAACCATCATGGACACTCCATTTTACTTGGTTGTGGATTGTTGTCTTCGGAAGACACTGACTCATTTGTATGGTTGTTCCAATGTTGGCTTAGATGCATGCGTAATAAGAGTCCTGAAGGCATTATAACTGATCAATGCAGGGCAATGGCCAACGCTATTGAACAAGTGTTTCCTAATACGAGGCATAGGTGGTGTTTATGGCACATCCTGAAGAAGTTTCCTGAAAAATTCCACGACTATAGAAATAATGCCGCTATCAAAAGCGAACTACATGCGCTTATATATGATTGTGGTTGTCCAACAGAATTTAAAAAGGGTTGGGAGGAACTACTTACAAAACATGGAATCCAGGAAAATGAATGGCTATGTAATTTGTACCAAGAGAGACATAAATGGGTTCCGTGTTATTTGAAAAATAAATTTTGGGCAGGCATGTCTACCACTCAGATAAGTGAGGGAATAAATGCTTTTTTTGATGGATTTATTAATTCCACAACCACTCTTCAACAATTTGTGGTTCAATACGACAATGCTGTTAGAGTAAAGGCCCAAAAGGAAATAGAAGCGGACTTCTCGTCCATGAACACCACTATTGCATGTGGCTCTCAGTCACCGATTGAGAGACAATTTCAAGTTCAATACACACATGCAAAGTTTGAGGAGGTCCAAACAGAGTTCCGTTCAAGGATGAATTGTTTCATCAAAGACACCTTAAAGGACGACTTGTGGAACACTTACACTATAAAAGAGGAACGAATGTGGGAAGGTAATCCTTTACCTGATAAATTTTACAAAGTTCAATTTGATCCCCTCACACAGTCAACCACTTGCTCTTGCCAACTGTTTCAGTTTAGAGGAATTATATGTCGTCATTCCCTATTGGTATTTGGTCAAGAAGATGTATACAGTGTTCCCTCAGAATACATTTTGCGGCGTTGGAGCAAAAATATCCGAAGAAGACACACACTAATAACAACATCGTATAGTACTTCTAGTAATGACCCACGCATGCAAAGATACAAGATGTTGTGCAAACGTTTTTATGAAATTGCAGAAGTTGCGTGTGAGTCTGAGGTTGCTACTTCTGAATTGGAAAAAGAAATTCATTGTCTTGGTCAAAAATTTGGTTTCAGTTCATCGATGACAAATAACATCATCAGTCATGCAGGCCAACTAAGATACGATACTGGTGCATGCACGTCAATTCCACATACTCCAGTTGGAACATCTGATGTGGTTGTTCACAGTCCTGCAACTGTTAAGCGAAAAGGACGTCCACGCACAAACAGGTTGAAGTCCACCGTTGAGAAAAGAACCCAAAGAAGAAAGTCCGCTTCAGGCAGGAAGACTTCAACACCACCCACCCTTCATATGGAGACAAGGGCATGTAATGTTTCTGAACGTGATGACCATGTTCAATTTCACGCGGACTCTATCCAACTATCACAAGATACCGAAATGGGTCATTTAGGATTTATGTCATTGTTGTTAGCTGTACATAACAATTTCGATAACATTAGTTGA 2337 0.3997 MSKHTMNVDEANDCTDNVDDRNESLLDMDPTVQMCFESMIEARTFYTNYAIRCGFVVRTRTSKKDKDNNVYYLRLVCSREGKYVSSVKPVVKTLPSQTNQCPAEITIAKKDDKCFIRTVVLDHNHDLCPNNSNLFAANRKLSMQEKHTLEVNHDAGVRLNKSFLSIVNDAGGYENMDFVERDARNYIVQHRRSLCKDGDGQTLLRYFSSMKDTNNEFFYDITLDEGNKICSVFWADARSRAACEEFGDVVSFDTTYLTNKYDMPFAPFVGVNHHGHSILLGCGLLSSEDTDSFVWLFQCWLRCMRNKSPEGIITDQCRAMANAIEQVFPNTRHRWCLWHILKKFPEKFHDYRNNAAIKSELHALIYDCGCPTEFKKGWEELLTKHGIQENEWLCNLYQERHKWVPCYLKNKFWAGMSTTQISEGINAFFDGFINSTTTLQQFVVQYDNAVRVKAQKEIEADFSSMNTTIACGSQSPIERQFQVQYTHAKFEEVQTEFRSRMNCFIKDTLKDDLWNTYTIKEERMWEGNPLPDKFYKVQFDPLTQSTTCSCQLFQFRGIICRHSLLVFGQEDVYSVPSEYILRRWSKNIRRRHTLITTSYSTSSNDPRMQRYKMLCKRFYEIAEVACESEVATSELEKEIHCLGQKFGFSSSMTNNIISHAGQLRYDTGACTSIPHTPVGTSDVVVHSPATVKRKGRPRTNRLKSTVEKRTQRRKSASGRKTSTPPTLHMETRACNVSERDDHVQFHADSIQLSQDTEMGHLGFMSLLLAVHNNFDNIS 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01157 778 MobiDBLite consensus disorder prediction 1 20 - -
Vian2g01157 778 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 20 641 IPR031052 GO:0006355
Vian2g01157 778 SMART 26again6 546 573 IPR006564 GO:0008270
Vian2g01157 778 MobiDBLite consensus disorder prediction 691 729 - -
Vian2g01157 778 ProSiteProfiles Zinc finger SWIM-type profile. 535 571 IPR007527 GO:0008270
Vian2g01157 778 Pfam FAR1 DNA-binding domain 44 128 IPR004330 -
Vian2g01157 778 Pfam MULE transposase domain 249 343 IPR018289 -
Vian2g01157 778 Pfam SWIM zinc finger 545 567 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01157 Vian-Chr2 22916416 22918837 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vian2g01157 MULE 2.8e-34 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01157 - - var:108341250 1071.61