Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01152 ATGTCTCTTCCAACACTCGTAGATACTAAGGAAAACACCACCAACACTACTTTCCCTAAACTCAAGATCAAAGATGGAGGAACACCCTCTTCTTCAGGAGCTCCTTCTTCTTCACGCAACTCTTTCCCTCCCATAACACATAACACAGAAGATAGCGATGAAGACGTGTTCACTGTTCCAGATGTGGAAACTGCAGCAAGTGTAGATTGTGCAGGAAGAAATCCATGTAGCAGTAATGTTAATGAAAGTAACTCGACAGATCCACAGATACATTATTGTGGTTTCCCTGGAAAACGGCGTCAGGGAAGAAACCCTGTCGACAAAGAGCATAGACGCCACAAACGCGATGAAGACGTGTTCACTGTTCCAGATGTGGAAACTGCAGCAAGTGTAGATTGTGCAGGAAGAAATCCATGTAGCAGTAATGTTAATGAAAGTAACTCGACAGATCCACAGATACATTATTGTGGTTTCCCTGGAAAACGGCGTCAGGGAAGAAACCCTGTCGACAAAGAGCATAGACGCCACAAACGCGATGAAGACGTGTTCACTGTTCCAGATGTGGAAACTGCAGCAAGTGTAGATTGTGCAGGAAGAAATCCATGTAGCAGTAATGTTAATGAAAGTAACTCGACAGATCCACAGATACATTATTGTGGTTTCCCTGGAAAACGGCGTCAGGGAAGAAACCCTGTCGACAAAGAGCATAGACGCCACAAACGGTTGTTAAGGAACAGGGTTTCTGCTCAACAAGCTCGTGAAAGGAAAAAGGTTTACGTAAATGACTTGGAATCAAGAGCTCTGGAGTTGGAAGAGAAGAATACCAATTTAGAAGGGCAAATTTCAACGTTGATCAATGAAAACACCATGCTGCGAAAGGTTCTCATGAACACCAGGGCCAAAGTTGACCACAACAATGAAGCGTAG 927 0.4401 MSLPTLVDTKENTTNTTFPKLKIKDGGTPSSSGAPSSSRNSFPPITHNTEDSDEDVFTVPDVETAASVDCAGRNPCSSNVNESNSTDPQIHYCGFPGKRRQGRNPVDKEHRRHKRDEDVFTVPDVETAASVDCAGRNPCSSNVNESNSTDPQIHYCGFPGKRRQGRNPVDKEHRRHKRDEDVFTVPDVETAASVDCAGRNPCSSNVNESNSTDPQIHYCGFPGKRRQGRNPVDKEHRRHKRLLRNRVSAQQARERKKVYVNDLESRALELEEKNTNLEGQISTLINENTMLRKVLMNTRAKVDHNNEA 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01152 308 Coils Coil 304 308 - -
Vian2g01152 308 Coils Coil 253 287 - -
Vian2g01152 308 CDD bZIP_HY5-like 238 288 - -
Vian2g01152 308 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 240 255 IPR004827 GO:0003700|GO:0006355
Vian2g01152 308 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 235 298 IPR004827 GO:0003700|GO:0006355
Vian2g01152 308 MobiDBLite consensus disorder prediction 1 54 - -
Vian2g01152 308 MobiDBLite consensus disorder prediction 101 115 - -
Vian2g01152 308 MobiDBLite consensus disorder prediction 69 115 - -
Vian2g01152 308 MobiDBLite consensus disorder prediction 29 47 - -
Vian2g01152 308 SUPERFAMILY Leucine zipper domain 237 296 IPR046347 GO:0003700|GO:0006355
Vian2g01152 308 Gene3D Single helix bin 256 297 - -
Vian2g01152 308 MobiDBLite consensus disorder prediction 157 178 - -
Vian2g01152 308 MobiDBLite consensus disorder prediction 1 21 - -
Vian2g01152 308 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 27 115 IPR044280 GO:0000981|GO:0045944
Vian2g01152 308 SMART brlzneu 233 297 IPR004827 GO:0003700|GO:0006355
Vian2g01152 308 MobiDBLite consensus disorder prediction 164 178 - -
Vian2g01152 308 MobiDBLite consensus disorder prediction 71 90 - -
Vian2g01152 308 Pfam bZIP transcription factor 234 293 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01152 Vian-Chr2 22829425 22851811 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01152 223 305 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 75.904 4.67e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vian2g01152 bZIP_1 3.8e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01152 K16241 - fve:101297428 169.859