Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01136 ATGTGTGTGATAGAAGGTCGCCGGAGGGTAACACTACATGAAGAAATGTCAGCTTCCGATAGCAGCCGAGCCCGTGTGCTAGCCGGCTTGACCCTCGACGACGTGTTAGCGAACCAGAAGAGACCTTCCTCGACGCCGCCCAGGGAACCACCACCGCCCAAGAACCGAACCCTTCTTGACATCATCAAAGACGACGAGTCCAACAAAAAGGATCGCAGATCTTGGAAAGCCTTCAAGGACAAGCTTAGGCTAAAGCGCGCAGGGTCTGCCTGGATATCGACAATTCATATCCCTACTTCGGATGTTCCTATTCCTAACCCGAATAGTAGAATCTTTACCCAGTTTGGTCGCCGTAACTCGGTCCGATTCCCCACTCAGACTACAACTCCGACTCAGTCTCTGACTCAGACTCCAACTCCGACTCAGACTCCATCTCCAACTCAGTCCGACTCGGACATGTCATCGCACTACATGACTCACCAGGTCGAGGACCTCAACCCCGCCACCGAAGACTCCGGTCCTCCGGCCACCGCACCCCGGGCAATCCGCCCCACGTTTAGCCGCCGCGGCTCCACCCGCTTCACCGGCGAAACCGCCGACAACAACACCGCCGGGACCCTGCGGCCGCAGCTCTCGTTGCGGAGTTCGGCCAACATGCCGACGGCGGAGCCGTACCGGCGGGGGAGGGTGGTGACCTTCCGCGACAGCTTCGACGACGAGGATGGGGAGGAGGACGGGGAGAAGCCGGGGGAGGGGAGGGCGCTGTCAGCGAGGGAGGCGGTTGCGGCGCAGGAGGCGTCGGAAGCGGCGGCGCAGGAGGCGGAGGCGGAGGAGGAGCAGGCGCCGGTGATGATGTCGCTGATGGACTTGTTAGAGGAGACTGACAGGGAAATGGGGCTTGAAGGATCAAGGTATATATTGAGTGATGAGGAGGATTTTGATGAGGATGCAGATGATGATGGTGAAGATGGAGATGGAGGGGGTTCCATGGAGCACACTTGCTGTATTTGCATGGTCAGGCATAAGGCTGCTTCTATTATACCATGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTTAGTAGAGGGAATTGTCCACTCTGCAACAATTTCATTTTGGAGATTCTTGAAATTTTTTAA 1149 0.5674 MCVIEGRRRVTLHEEMSASDSSRARVLAGLTLDDVLANQKRPSSTPPREPPPPKNRTLLDIIKDDESNKKDRRSWKAFKDKLRLKRAGSAWISTIHIPTSDVPIPNPNSRIFTQFGRRNSVRFPTQTTTPTQSLTQTPTPTQTPSPTQSDSDMSSHYMTHQVEDLNPATEDSGPPATAPRAIRPTFSRRGSTRFTGETADNNTAGTLRPQLSLRSSANMPTAEPYRRGRVVTFRDSFDDEDGEEDGEKPGEGRALSAREAVAAQEASEAAAQEAEAEEEQAPVMMSLMDLLEETDREMGLEGSRYILSDEEDFDEDADDDGEDGDGGGSMEHTCCICMVRHKAASIIPCGHTFCRMCSRELMVSRGNCPLCNNFILEILEIF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01136 382 PANTHER OS01G0917900 PROTEIN 23 382 - -
Vian2g01136 382 MobiDBLite consensus disorder prediction 118 166 - -
Vian2g01136 382 Pfam Zinc finger, C3HC4 type (RING finger) 331 375 - -
Vian2g01136 382 SUPERFAMILY RING/U-box 333 378 - -
Vian2g01136 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 382 IPR013083 -
Vian2g01136 382 SMART ring_2 334 371 IPR001841 -
Vian2g01136 382 CDD RING-HC 333 371 - -
Vian2g01136 382 Coils Coil 257 280 - -
Vian2g01136 382 MobiDBLite consensus disorder prediction 231 254 - -
Vian2g01136 382 MobiDBLite consensus disorder prediction 188 205 - -
Vian2g01136 382 ProSiteProfiles Zinc finger RING-type profile. 334 372 IPR001841 -
Vian2g01136 382 MobiDBLite consensus disorder prediction 118 205 - -
Vian2g01136 382 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01136 Vian-Chr2 22341507 22343033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01136 22 382 C3H Transcription Factor Family AT3G07120 33.938 1.08e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01136 - - var:108328735 623.624