Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01104 ATGGCGTACGCGATGAAGCCCACCAAACCAGGCTTTGAGGAATCCCAGGAACAGATCCACAAGATAAGGATCACCCTTTCTTCCAAGCATGTCAAAAACCTCGAGAAGGTTTGTGGGGACCTTGTTCGCGGTGCAAAGGACAAACGCCTCAGGGTCAAGGGACCTGTTAGGATGCCCACTAAGGTTCTTCACATAACTACCAGGAAATCTCCTTGTGGTGAAGGTATTTTCCCACTTTCCTCACTTGTTACAGCCCCTTATAGTGATTCAAGACTTATCTCTTCTTTTTGGGTTTTGCTGTAA 303 0.4686 MAYAMKPTKPGFEESQEQIHKIRITLSSKHVKNLEKVCGDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGIFPLSSLVTAPYSDSRLISSFWVLL 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01104 100 Pfam Ribosomal protein S10p/S20e 23 74 IPR027486 -
Vian2g01104 100 SMART Ribosomal_S10_2 23 88 IPR027486 -
Vian2g01104 100 ProSitePatterns Ribosomal protein S10 signature. 45 60 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian2g01104 100 Gene3D Ribosomal protein S10 domain 3 80 IPR036838 -
Vian2g01104 100 PRINTS Ribosomal protein S10 family signature 56 71 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vian2g01104 100 PRINTS Ribosomal protein S10 family signature 21 34 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vian2g01104 100 SUPERFAMILY Ribosomal protein S10 21 75 IPR036838 -
Vian2g01104 100 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 14 88 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01104 Vian-Chr2 21330420 21330801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01104 1 75 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 85.526 1.50e-40 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01104 K02969 - twl:120006120 148.288