Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01086 ATGTCTGCTTCATCCTCTTCTTGCAAATGCTTGGGTTTGGGGTTTCAACAGAGTTGTGGCAGTGTGAGCAGGTTGGGTGTAAAACCCATTTGCTTCTGTGGTCAAAATGCAGTCTTCCGCATTGCAAGAACCCCTAAAAACAAGGGCAAAAGATTTTGGGGATGCCCCAAGTTCAAGTGGTGCAGTGAAGATGTAATTCATGAAGGAAATGTGGTCACTGTAGAAGAAAGTGGAAGAAATAAAGAAGTGGGTGGAAGTTTGATGAAGATGGAACAAATGGTGATGAAGATGGAAAAGAGAGATGTTGAAAAGCTTAAAATAGCCTATTTACAGAAAACTGTTGTTAGTCTGGAAAAGTGGTTGAAGGTGTTAATAGAGATGATGGTTATTATATGGGATCAACTAGCCATAGGAAAGGAAACTGGTCGGCGCTTGGGAATGGGTACCAATATGTATCCTACATCTGCATTGCTTGGGCAGGATAAGGATGAAGCCATATCTGCATTACTTATTGATGAACTGATTGAAAAAGCAGATGGGTTTGTTGGTCTTTTTCCTTGTGTGTTTCTATCTTCATCTTTGCAATTGATTGTTTTTAATACTATTGAGCACAAGTACGAGATTGTGAAACGTTTACAAGCCAGGAAACATATTTGGGGAATGACTAGTGATGGAGTGAATGACGCACCTGCACTCAAGAAGGCCGACATTGGTATAGTTGTTGCTGATGCAACTGATGCAGCTCGGAGTGCCTCTGATATTCTTTCAACAAAACCTAGCCTTAGTATTATTATTAGTGCAGTGTTCACAAGTCAAGCCATCTTCCAGAAAATGAAAAATTATACAGTTAGCAATTGA 858 0.4009 MSASSSSCKCLGLGFQQSCGSVSRLGVKPICFCGQNAVFRIARTPKNKGKRFWGCPKFKWCSEDVIHEGNVVTVEESGRNKEVGGSLMKMEQMVMKMEKRDVEKLKIAYLQKTVVSLEKWLKVLIEMMVIIWDQLAIGKETGRRLGMGTNMYPTSALLGQDKDEAISALLIDELIEKADGFVGLFPCVFLSSSLQLIVFNTIEHKYEIVKRLQARKHIWGMTSDGVNDAPALKKADIGIVVADATDAARSASDILSTKPSLSIIISAVFTSQAIFQKMKNYTVSN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01086 285 PRINTS H+-transporting ATPase (proton pump) signature 90 108 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01086 285 PRINTS H+-transporting ATPase (proton pump) signature 194 210 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01086 285 PRINTS H+-transporting ATPase (proton pump) signature 253 278 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01086 285 PRINTS H+-transporting ATPase (proton pump) signature 222 238 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian2g01086 285 PRINTS P-type cation-transporting ATPase superfamily signature 222 241 - -
Vian2g01086 285 PRINTS P-type cation-transporting ATPase superfamily signature 245 257 - -
Vian2g01086 285 FunFam Plasma membrane ATPase 106 270 - -
Vian2g01086 285 Gene3D - 260 283 - -
Vian2g01086 285 Gene3D - 119 259 IPR023214 -
Vian2g01086 285 SUPERFAMILY HAD-like 183 268 IPR036412 -
Vian2g01086 285 Pfam GRF zinc finger 29 61 IPR010666 GO:0008270
Vian2g01086 285 PANTHER CALCIUM-TRANSPORTING ATPASE 121 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01086 Vian-Chr2 20983896 20993699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01086 116 283 Primary Pumps ATPases AT3G47950 69.643 3.80e-70 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01086 K01535 - rcu:8258168 222.246