Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01084 ATGGCGAGCACCAAAGTTCAGAGGGTTATGACTCAGCCCATAAACTTGATTTTCAGGTTTCTACAAAGCAAAGCACGCATTCAGATTTGGCTTTTTGAGCAAAAAGATTTGAGGATTGAAGGCCGAATCATTGGTTTTGATGAATACATGAATTTAGTTCTTGATGATGCTGAAGAAGTGAACATCAAAAAGAAAAGCAAAAAGACATTAGGGAGAATCCTTCTTAAAGGAGACAACATAACCTTAATGATGAGCACAAAGAAGCGAGTCACTGACCCCTTCGACGATCAGGCTCGAGCCCGACTCGTTGGTGCCGATCACTGGAATTTTAACTCCAGCAGTACCCAGTGTTCCGGTGATAGCGACTCTCTCTCCCTGTCTAATCTCGTCCACGGTTTCTTTGAAGAAGACACTAACGGCTGTAGCGAGGATAAACAGTTCGATGACTCCGACTGTGACCGAGTTGACTCAGTCAAAGACACCGATTCTGCAAGTAACTCAGCCAGTCTTGCAATCTCACTCTACAATGGGGACGCTTACCGAAACTTACTTATCGCGCATGTTTCTGAAGCAGTTGAAAAGTTTGCAATTCTGAAAGAACAAAACGCAACGCTCTTCCGTGGGAACGTGGCAGGGTTTCTCCGGGACAGACGGCACAACGCCGTGGTATGCGAGACCATACCGGACCCCTCTGGTGGGAGCCATGAGTTCATTGACGTGGTCCAGTCTGGAAGCACCACGTGGCGATACTTCGTGGACCTTGACTTCCACGCACAGTTTGAGATCGCGAGGCCGACGCAACTGTTCTCGGAGGTACTGACTGCCGTTCCCTGCATCTTTGTTGGATGTGCGGAGGAGCTGAAACAAACAGTTTCCAAGCTGTGTGAGGCATTGAGACAGTGTTTCAGGAGCAAGGGTCTTCCGGTTCCACCGTGGAGGAAGAATCTGTACATGCAGAATAAGTGGTTTGGTCCATGTCGCAGATCCGCAGAACCGGTTCGGATGGCTGCAGACCCGGTTCGGATGGCTGCGAATGGCGTTAGTTGCAGGTTGGTGGGGTTCGACAACACCGTCTTTGAAGCTGGAAGTGGTGCGCTGTTTGGACAAGATGATCCAATAAAAAGATGCTTAATGCACAGAAATGCGGCGAATGAACGTTGTTGTATTCTGAGTACTGGATGGAATATTCGGAGGAACAAATATCACCTGGAGAATCTGCTCCTCGACGAGAACGAAGACCTGAAAGTGTCAGACTTCGGCTTGTCTGCGCTACCTGATCAGTGCAGATCTGACGGGATGCTCGTGACGCTGGAGGTTCTGAAAAAGAAGGGCAACGATGGGTCGAAGGCTGATATATGGTCGTGTGGGTGTGAGAATGTGATGAGGATTTACAGTAAGTCTTTCAAAGCTGATTATGCATTCCCTAAATGGATTTCACTCGAGGCGAGATGCTTGATCTCTAATTTGCTGGTTGTAGACCCAGAGAAGAGGTATTCCATTCCTGACATCATGAAGGATCATTGGTTCCAAGTTGGGTTCATGTGCCCCATTGCGTTATCCATGAAGGAGACAGTTGTGGAGGATAACATCAACTTCAACGGGGATAATGTCGGTGGCAGTGGAAACGTCAACGACAATGAAGATGGTAACAGCAGAGGCAACCATTCTGGGGAACTGATCGGGTCCAAGCCGGCTCGTCCGTCTTACAATGCTTTCGAGATAATATCCTCATTGTCGCACATGTTTGATCTGAGTAATCTGTTCGAGACGAGGAAGTGGTTGCCATCGATGTTCATATCGAAGCACTCAGCGTCGTCGGTGATGGTGAAGCTGGAGGTGGTGGTGAAGAAGCTAAACTTTAGGGTGACAGGGAAGAAGCAGTTCACGAAAAGTTTGAACAAGGAAAAGGGTAAAGCGCATTAA 1923 0.4805 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMSTKKRVTDPFDDQARARLVGADHWNFNSSSTQCSGDSDSLSLSNLVHGFFEEDTNGCSEDKQFDDSDCDRVDSVKDTDSASNSASLAISLYNGDAYRNLLIAHVSEAVEKFAILKEQNATLFRGNVAGFLRDRRHNAVVCETIPDPSGGSHEFIDVVQSGSTTWRYFVDLDFHAQFEIARPTQLFSEVLTAVPCIFVGCAEELKQTVSKLCEALRQCFRSKGLPVPPWRKNLYMQNKWFGPCRRSAEPVRMAADPVRMAANGVSCRLVGFDNTVFEAGSGALFGQDDPIKRCLMHRNAANERCCILSTGWNIRRNKYHLENLLLDENEDLKVSDFGLSALPDQCRSDGMLVTLEVLKKKGNDGSKADIWSCGCENVMRIYSKSFKADYAFPKWISLEARCLISNLLVVDPEKRYSIPDIMKDHWFQVGFMCPIALSMKETVVEDNINFNGDNVGGSGNVNDNEDGNSRGNHSGELIGSKPARPSYNAFEIISSLSHMFDLSNLFETRKWLPSMFISKHSASSVMVKLEVVVKKLNFRVTGKKQFTKSLNKEKGKAH 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01084 640 ProSiteProfiles NAF domain profile. 564 589 IPR018451 GO:0007165
Vian2g01084 640 SUPERFAMILY Protein kinase-like (PK-like) 404 510 IPR011009 -
Vian2g01084 640 MobiDBLite consensus disorder prediction 537 557 - -
Vian2g01084 640 Pfam LSM domain 20 83 IPR001163 -
Vian2g01084 640 Pfam PDDEXK-like family of unknown function 127 328 IPR006502 -
Vian2g01084 640 FunFam Small nuclear ribonucleoprotein E 1 87 - -
Vian2g01084 640 PANTHER OS03G0796600 PROTEIN 82 339 IPR006502 -
Vian2g01084 640 SUPERFAMILY Sm-like ribonucleoproteins 12 87 IPR010920 -
Vian2g01084 640 Pfam NAF domain 568 623 IPR004041 GO:0007165
Vian2g01084 640 NCBIfam uncharacterized plant-specific domain TIGR01615 209 329 IPR006502 -
Vian2g01084 640 MobiDBLite consensus disorder prediction 537 560 - -
Vian2g01084 640 Gene3D Transferase(Phosphotransferase) domain 1 401 546 - -
Vian2g01084 640 SMART Sm3 19 85 IPR001163 -
Vian2g01084 640 CDD Sm_E 7 85 IPR027078 GO:0000398|GO:0005681
Vian2g01084 640 SMART serkin_6 285 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g01084 640 ProSiteProfiles Sm domain profile. 16 89 IPR047575 GO:0003723
Vian2g01084 640 Gene3D - 1 86 - -
Vian2g01084 640 Gene3D Kinase associated domain 1, KA1 566 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01084 Vian-Chr2 20878866 20903971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01084 404 628 CBL-interacting serine-threonine protein kinases AT5G10930 45.382 6.93e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vian2g01084 PDDEXK_6 2e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01084 - - vum:124827271 524.242