Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian2g01080 | ATGCCTCCAAAAGTCGAGGATTTCTTGTCTGTGGCAAAACAAGCGGAGCAACTTCGAAAGGACGGCAACAATTACTTCAAGAAACAGCGTTTTGGAGCTGCCATTGATGCTTACACTGAGGCGATTGCACTGTGCCCCGATGTTCCGGTGTATTGGACCAACCGTGCTCTCTGTCATCTCAAGCGCAGTAATTGGACCAGAGTAGAGGAAGACTCTCGTGAAGCTATCAAGCTTGACAGCAATTTGGTTAAGGCCCACTATTTGTTAGGTCTTGCATTGGTAGAGAGACAAGAGTTTGCTAGAGGAATCTTAGAATTGAAGAAGGCTTTGGATCTTGATAGAGGTTCCCATCCTAAGGGCCAAATGGTAGAGGAAATATGGCAAGAGCTTGCAAAAGCAAAATACCTAGAGTGGGAACATTCATATGTTAAGCGATCATGGGAACTACAGAGCTTGAAAGAAGCTTGTGAGGATGCTCTAAAGGAAAAACATTTTCTCGAAGTCCCCCACACGGAAGGATCTGTAGAAGATGATACTACCCATTTAGAACAGTTAGAGGCTTTAGGAAGAGTGTTTGATAAAGTTGCAGAACAAGACATGCCTACTGAGGTGCCAGATTATCTGTGCTGTAGAATCTCACTTGATATTTTCTGTGATCCTGTGATTACCCCAAGTGGACTTACATACGAGAAGACAGTGATTATTGACCATCTTGAGAAGGTGGGTAAGTTTGATCCAGTGACTCGAGAACCTCTTGATCCATCACAGCTAATACCAAACCTAGCAATAAAGCAAGCAGTTGAGGCATTCTTGGATAAACATGGGTGGGCATACAAAGATATATTAACCAAAAGCTTTTAA | 861 | 0.4309 | MPPKVEDFLSVAKQAEQLRKDGNNYFKKQRFGAAIDAYTEAIALCPDVPVYWTNRALCHLKRSNWTRVEEDSREAIKLDSNLVKAHYLLGLALVERQEFARGILELKKALDLDRGSHPKGQMVEEIWQELAKAKYLEWEHSYVKRSWELQSLKEACEDALKEKHFLEVPHTEGSVEDDTTHLEQLEALGRVFDKVAEQDMPTEVPDYLCCRISLDIFCDPVITPSGLTYEKTVIIDHLEKVGKFDPVTREPLDPSQLIPNLAIKQAVEAFLDKHGWAYKDILTKSF | 286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian2g01080 | 286 | SMART | tpr_5 | 15 | 48 | IPR019734 | GO:0005515 | |
| Vian2g01080 | 286 | SMART | tpr_5 | 83 | 116 | IPR019734 | GO:0005515 | |
| Vian2g01080 | 286 | SMART | tpr_5 | 49 | 82 | IPR019734 | GO:0005515 | |
| Vian2g01080 | 286 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 280 | IPR013083 | - | |
| Vian2g01080 | 286 | Pfam | U-box domain | 204 | 276 | IPR003613 | GO:0004842|GO:0016567 | |
| Vian2g01080 | 286 | ProSiteProfiles | TPR repeat profile. | 15 | 48 | IPR019734 | GO:0005515 | |
| Vian2g01080 | 286 | SUPERFAMILY | RING/U-box | 198 | 280 | - | - | |
| Vian2g01080 | 286 | Pfam | Tetratricopeptide repeat | 73 | 115 | - | - | |
| Vian2g01080 | 286 | Pfam | Tetratricopeptide repeat | 22 | 66 | - | - | |
| Vian2g01080 | 286 | SUPERFAMILY | TPR-like | 14 | 134 | IPR011990 | GO:0005515 | |
| Vian2g01080 | 286 | CDD | RING-Ubox_CHIP | 204 | 274 | IPR045202 | - | |
| Vian2g01080 | 286 | ProSiteProfiles | U-box domain profile. | 203 | 277 | IPR003613 | GO:0004842|GO:0016567 | |
| Vian2g01080 | 286 | SMART | Ubox_2 | 207 | 270 | IPR003613 | GO:0004842|GO:0016567 | |
| Vian2g01080 | 286 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 10 | 279 | IPR045200 | GO:0000209|GO:0061630 | |
| Vian2g01080 | 286 | Gene3D | Tetratricopeptide repeat domain | 9 | 167 | IPR011990 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian2g01080 | Vian-Chr2 | 20757053 | 20759650 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian2g01080 | 15 | 279 | U-box Gene Family | AT3G07370 | 65.414 | 6.76e-132 | 373 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian2g01080 | K09561 | - | gmx:100796519 | 435.647 |